View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_high_19 (Length: 237)
Name: NF15764_high_19
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2992965 - 2992729
Alignment:
| Q |
1 |
cttcactaattagagatgggatttcaagcataagtgttatcttttttattcaaatagttagtgacagattatttatctttgtgacgggtttaatgtcgtc |
100 |
Q |
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| T |
2992965 |
cttcactaattagagatgggatttcaagcataagtgttatcttttttattcaaatagttagtgacagattatttatctttgtgacgggtttaatgtcgtc |
2992866 |
T |
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| Q |
101 |
gcaattagtgtctgattaattataattccctcaagaacactctgtgagaggttcaaattggttatagatttgtgatcatcattaaattcgtcgctaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |
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| T |
2992865 |
gcaattagtgtctgattaattataattccctcaagaacactctgtgagaggttcaaattggttatagatttgtggtcgtcattaaattcatcgctaaaat |
2992766 |
T |
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| Q |
201 |
tctgtggcagaattttaacatgttagagatggatttc |
237 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
2992765 |
tctgtggcagaattttaacatgttagcgatggatttc |
2992729 |
T |
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