View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15764_high_2 (Length: 660)

Name: NF15764_high_2
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15764_high_2
NF15764_high_2
[»] chr8 (15 HSPs)
chr8 (15-526)||(27066833-27067344)
chr8 (131-367)||(27080633-27080869)
chr8 (118-323)||(27053747-27053952)
chr8 (528-642)||(27067412-27067525)
chr8 (413-532)||(22651983-22652106)
chr8 (456-533)||(29447084-29447163)
chr8 (450-532)||(21465419-21465503)
chr8 (456-532)||(2572030-2572108)
chr8 (456-521)||(26902149-26902216)
chr8 (462-533)||(15816109-15816182)
chr8 (485-531)||(18170485-18170533)
chr8 (485-531)||(18634053-18634101)
chr8 (485-527)||(24669445-24669489)
chr8 (485-527)||(40332203-40332247)
chr8 (479-532)||(25566848-25566903)
[»] chr5 (11 HSPs)
chr5 (447-532)||(19579708-19579795)
chr5 (413-526)||(41091186-41091303)
chr5 (451-532)||(3966510-3966593)
chr5 (459-532)||(39698548-39698623)
chr5 (447-504)||(21542067-21542124)
chr5 (456-532)||(21522757-21522835)
chr5 (456-532)||(21533323-21533401)
chr5 (489-527)||(6326304-6326344)
chr5 (449-527)||(30098338-30098418)
chr5 (456-504)||(6401535-6401583)
chr5 (462-531)||(30080481-30080552)
[»] chr4 (3 HSPs)
chr4 (447-532)||(847958-848045)
chr4 (456-533)||(24613675-24613754)
chr4 (447-526)||(30982843-30982924)
[»] scaffold0044 (1 HSPs)
scaffold0044 (447-527)||(53192-53274)
[»] chr7 (5 HSPs)
chr7 (479-534)||(27945046-27945103)
chr7 (462-532)||(24339649-24339721)
chr7 (485-532)||(21880159-21880208)
chr7 (485-532)||(28155577-28155626)
chr7 (466-531)||(1885581-1885648)
[»] chr1 (9 HSPs)
chr1 (456-527)||(6612145-6612218)
chr1 (456-502)||(21032245-21032291)
chr1 (413-527)||(25361898-25362012)
chr1 (462-527)||(44482242-44482309)
chr1 (462-519)||(47989517-47989576)
chr1 (485-532)||(41877473-41877522)
chr1 (479-533)||(24577183-24577239)
chr1 (462-519)||(30173742-30173801)
chr1 (487-532)||(31015050-31015097)
[»] chr6 (11 HSPs)
chr6 (447-532)||(16766704-16766791)
chr6 (466-532)||(21395292-21395359)
chr6 (447-533)||(31384926-31385013)
chr6 (456-533)||(8365493-8365572)
chr6 (447-532)||(9107335-9107422)
chr6 (456-532)||(9195728-9195806)
chr6 (485-532)||(7977833-7977882)
chr6 (479-533)||(10770671-10770727)
chr6 (462-527)||(5970088-5970155)
chr6 (456-504)||(10294144-10294192)
chr6 (479-532)||(12696331-12696386)
[»] chr3 (13 HSPs)
chr3 (444-527)||(15796256-15796341)
chr3 (447-532)||(4987256-4987343)
chr3 (407-504)||(34185046-34185145)
chr3 (457-533)||(14209119-14209197)
chr3 (457-504)||(14216929-14216976)
chr3 (457-504)||(14223058-14223105)
chr3 (487-525)||(4990972-4991012)
chr3 (456-533)||(750592-750671)
chr3 (467-532)||(8039820-8039887)
chr3 (479-532)||(9800047-9800102)
chr3 (447-532)||(14832106-14832193)
chr3 (456-504)||(41961624-41961672)
chr3 (479-532)||(49651783-49651838)
[»] scaffold0018 (1 HSPs)
scaffold0018 (483-527)||(192250-192296)
[»] chr2 (3 HSPs)
chr2 (456-532)||(44860327-44860405)
chr2 (462-525)||(11223843-11223908)
chr2 (457-532)||(30717505-30717582)
[»] scaffold0049 (1 HSPs)
scaffold0049 (485-532)||(63780-63829)
[»] scaffold0004 (1 HSPs)
scaffold0004 (489-532)||(92814-92859)
[»] scaffold0136 (1 HSPs)
scaffold0136 (462-519)||(3829-3888)


Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 15 - 526
Target Start/End: Original strand, 27066833 - 27067344
Alignment:
Q  15 cataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066833 cataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgag 27066932  T
Q  115 ttccgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtg 214  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27066933 ttccgggaagcagaagagatgggcggcggagcagaattccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtg 27067032  T
Q  215 gcgctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067033 gcgctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtga 27067132  T
Q  315 atgggttttggttcttctctttttcatgatttatagctaaaccaacctgcattattcataaacataactaattagaataataataaaagagacatcaact 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  27067133 atgggttttggttcttctctttttcatgatttatagctaaaccaacctgcattattcataaacataaacaattagaataataataaaagagacatcaact 27067232  T
Q  415 atgaagcacatacactattcagattagacgttccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattacagaattatgta 514  Q
    |||||||||  |||||  || ||||||||||||||||||| |||||||||||||||||||||  ||||| ||| ||||||||||||||||||||||||||    
T  27067233 atgaagcacggacactcctcggattagacgttccggtgttcgacacatgtcgtgtccgacaccgacacgacactgacacttgtaattacagaattatgta 27067332  T
Q  515 attttctcaaat 526  Q
    ||||||||||||    
T  27067333 attttctcaaat 27067344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 131 - 367
Target Start/End: Original strand, 27080633 - 27080869
Alignment:
Q  131 agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgagg 230  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| |  || | |||||  |||||||||||||||||||| |    
T  27080633 agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgtttcgcaaaagccgcggtctcggtggcgctgagtggtgatg 27080732  T
Q  231 ccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttctt 330  Q
    |||||  ||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| | |||||||||||||||||| ||    
T  27080733 ccttattgaggatgaatgttggttttggtaacttgtttttgatcactctgtcccaataacgaattgcaaaagctttcgcagtgaatgggttttggttttt 27080832  T
Q  331 ctctttttcatgatttatagctaaaccaacctgcatt 367  Q
     |||  | ||||||  |  ||||||||||||||||||    
T  27080833 gtctcctgcatgatccactgctaaaccaacctgcatt 27080869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 118 - 323
Target Start/End: Original strand, 27053747 - 27053952
Alignment:
Q  118 cgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcg 217  Q
    |||||||||||||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||| ||||| |||   || |  || || |||||||||    
T  27053747 cgggaagcagaagagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtgcttttcaaaagctgcagcatcggtggcg 27053846  T
Q  218 ctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatg 317  Q
    || |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||| |||| || |||||||||||||    
T  27053847 ctaagtggtgacgccttggagaggatgaaggatggttttggcaagttgtttttgatcactctgtcccaataccgaattgcatacgcctttggagtgaatg 27053946  T
Q  318 ggtttt 323  Q
     |||||    
T  27053947 agtttt 27053952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 528 - 642
Target Start/End: Original strand, 27067412 - 27067525
Alignment:
Q  528 tttagtgtaagatactaacatttaaagtatttatgcaacaattaattattggacaacaaaatagtgatgaaatgaagnnnnnnntaaacttacagtgagt 627  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  27067412 tttagtgtaagatactatcatttaaagtatttatgcaacaattaattattggacaacaaaatagtgatgaaatgaag-aaaaaataaacttacagtgagt 27067510  T
Q  628 atggagagaaggatg 642  Q
    |||||||||||||||    
T  27067511 atggagagaaggatg 27067525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 413 - 532
Target Start/End: Complemental strand, 22652106 - 22651983
Alignment:
Q  413 ctatgaagcacatacactattcagattagacgtt--ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaat 508  Q
    |||||||||||  |||||  || ||||||||||   |||||||  |||||||||||||||||||||  ||||| |||||||||||||||||| |  ||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaat 22652007  T
Q  509 tatgtaattttctcaaatttttag 532  Q
    ||||| ||||| ||||||| ||||    
T  22652006 tatgtgattttttcaaattattag 22651983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 533
Target Start/End: Original strand, 29447084 - 29447163
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    |||||||||||||||||||||  ||| | |||||||||||||| |||||  ||||||||| ||||||||||||| |||||    
T  29447084 gacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaattatgtgattttctcaaattattagt 29447163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 450 - 532
Target Start/End: Complemental strand, 21465503 - 21465419
Alignment:
Q  450 gtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| ||||| |||||||||||||||| ||||| |||| |||||||||||||||  ||||||| | ||||| ||||||| ||||    
T  21465503 gtgttggacacgtgtcgtgtccgacactgacacgacaccaacacttgtaattacatcgaattatatgattttttcaaattattag 21465419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 2572030 - 2572108
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| |||||||||||||||  ||||| ||||||||||||||||||||   |||||||| ||||| ||||||| ||||    
T  2572030 gacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattag 2572108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 521
Target Start/End: Original strand, 26902149 - 26902216
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttct 521  Q
    ||||| |||||||||||||||||| ||| ||||||||| | ||||||||  ||||||||| |||||||    
T  26902149 gacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaattatgtgattttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 533
Target Start/End: Original strand, 15816109 - 15816182
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    |||||||||||||||  ||||| ||||||||||| ||||||||   |||||||| ||||| ||||||| |||||    
T  15816109 tgtcgtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgattttttcaaattattagt 15816182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 18170485 - 18170533
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaattttta 531  Q
    |||||||| |||||||||||  ||||||||||||||| |||||||||||    
T  18170485 caccgacatttgtaattacattgaattatgtaattttttcaaattttta 18170533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 18634053 - 18634101
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaattttta 531  Q
    |||||||| |||||||||||  ||||||||||||||| |||||||||||    
T  18634053 caccgacatttgtaattacattgaattatgtaattttttcaaattttta 18634101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 24669489 - 24669445
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||    
T  24669489 caccgacacttgtaattacactgaattatgtaatttcctcaaatt 24669445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 40332247 - 40332203
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||    
T  40332247 caccgacacttgtaattacactgaattatgtgattttctcaaatt 40332203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 25566903 - 25566848
Alignment:
Q  479 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  25566903 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 25566848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 19579795 - 19579708
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaatt--acagaattatgtaattttctcaaatttttag 532  Q
    |||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||  ||  |||||||| ||||||||||||| ||||    
T  19579795 ccggtgttagacatatgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgattttctcaaattattag 19579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 526
Target Start/End: Original strand, 41091186 - 41091303
Alignment:
Q  413 ctatgaagcacatacactattcagattagacgttcc--ggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaat 508  Q
    |||||||||||  |||||  ||||||||||||| ||  |||||| ||||||||||| |||||||| | ||||| || |||||| | ||||||||  ||||    
T  41091186 ctatgaagcacgaacactcctcagattagacgtgccttggtgttagacacatgtcgcgtccgacattgacacgacatcgacacatataattacactgaat 41091285  T
Q  509 tatgtaattttctcaaat 526  Q
    ||||| ||||||||||||    
T  41091286 tatgtgattttctcaaat 41091303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 532
Target Start/End: Complemental strand, 3966593 - 3966510
Alignment:
Q  451 tgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||| | ||||||||  ||||| ||| ||||||||||||| ||||    
T  3966593 tgttggacacatgttgtgtccgacactgacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattag 3966510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 39698623 - 39698548
Alignment:
Q  459 acatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||||  ||||| ||| ||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  39698623 acatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattag 39698548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 21542124 - 21542067
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca 504  Q
    |||||||  ||||| |||||||||||||||  ||||| ||||||||||||||||||||    
T  21542124 ccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattaca 21542067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 532
Target Start/End: Complemental strand, 21522835 - 21522757
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| |||||||||||||||  ||||| |||||||| |||||||||||  ||||||||| ||||| | ||||| ||||    
T  21522835 gacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattag 21522757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 532
Target Start/End: Complemental strand, 21533401 - 21533323
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| |||||||||||||||  ||||| |||||||| |||||||||||  ||||||||| ||||| | ||||| ||||    
T  21533401 gacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattag 21533323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 527
Target Start/End: Original strand, 6326304 - 6326344
Alignment:
Q  489 gacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  6326304 gacacttgtaattacactgaattatgtaattttctcaaatt 6326344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 527
Target Start/End: Complemental strand, 30098418 - 30098338
Alignment:
Q  449 ggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    ||||| |||||| |||||||||||||||| || ||  |||||||  | ||||||||  ||||||||| |||||||||||||    
T  30098418 ggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaattatgtgattttctcaaatt 30098338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 504
Target Start/End: Complemental strand, 6401583 - 6401535
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca 504  Q
    ||||| |||||||||||||||| ||||| ||||||||| | ||||||||    
T  6401583 gacacgtgtcgtgtccgacactgacacgacaccgacacatataattaca 6401535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 531
Target Start/End: Original strand, 30080481 - 30080552
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaattttta 531  Q
    |||| ||||||||||| ||||  |||||| |||||| ||||||  ||||||||| ||||||||||| |||||    
T  30080481 tgtcatgtccgacactaacaccacaccgatacttgtgattacattgaattatgtcattttctcaaaatttta 30080552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 848045 - 847958
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||| ||||| | |||||||||||||  ||| | |||||||||||||||||| |  ||||||||||||||||||||||| ||||    
T  848045 ccggtgttcgacacgtttcgtgtccgacaccaacaagacaccgacacttgtaattatagtgaattatgtaattttctcaaattattag 847958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 533
Target Start/End: Original strand, 24613675 - 24613754
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    ||||| ||||||||| |||||  ||| | |||||||||||||| |||||  ||||||||| ||||||||||||| |||||    
T  24613675 gacacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgtgattttctcaaattattagt 24613754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 526
Target Start/End: Original strand, 30982843 - 30982924
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaat 526  Q
    |||||||  ||||| ||||||||| |||||  ||||| ||||||||||| ||||||||  ||| ||||| ||||||||||||    
T  30982843 ccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaat 30982924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 447 - 527
Target Start/End: Complemental strand, 53274 - 53192
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    |||||||  ||||| |||| ||||||||||  ||||||||||||||||| ||||||||  ||||||||| |||||||||||||    
T  53274 ccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttctcaaatt 53192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 534
Target Start/End: Complemental strand, 27945103 - 27945046
Alignment:
Q  479 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagtg 534  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  27945103 acacgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtg 27945046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 532
Target Start/End: Complemental strand, 24339721 - 24339649
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||||||||||  ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  24339721 tgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 24339649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 21880208 - 21880159
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  21880208 caccgacacttgtaattacactgaattatgtaattttctcaaattattag 21880159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 28155626 - 28155577
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  28155626 caccgacacttgtaattacaccgaattatgtaattttctcaaattattag 28155577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 466 - 531
Target Start/End: Complemental strand, 1885648 - 1885581
Alignment:
Q  466 gtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaattttta 531  Q
    |||||||||||  ||||| ||||||||||||| ||||||  ||||||||| ||||| ||||| |||||    
T  1885648 gtgtccgacaccaacacgacaccgacacttgtgattacattgaattatgtcattttttcaaaatttta 1885581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 527
Target Start/End: Original strand, 6612145 - 6612218
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    ||||||| ||||||||||||   ||||| ||||||||||||||||||||  ||||||||||||||| |||||||    
T  6612145 gacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaatt 6612218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 502
Target Start/End: Complemental strand, 21032291 - 21032245
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaatta 502  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||    
T  21032291 gacacatgtcgtgtccgacacccacacgacaccgacatttgtaatta 21032245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 527
Target Start/End: Complemental strand, 25362012 - 25361898
Alignment:
Q  413 ctatgaagcacatacactattcagattagacgttccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaatta 510  Q
    |||||||||||  ||||| ||| ||||||  ||||||||||  ||||  |||||||||||||||  ||||| ||| ||||| | ||||||||  ||||||    
T  25362012 ctatgaagcacggacactcttcggattaggtgttccggtgtcggaca--tgtcgtgtccgacaccgacacgacactgacacatataattacactgaatta 25361915  T
Q  511 tgtaattttctcaaatt 527  Q
    ||| |||||||||||||    
T  25361914 tgtgattttctcaaatt 25361898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 527
Target Start/End: Complemental strand, 44482309 - 44482242
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    |||||||||||||||  ||||| ||||||||| | ||||||||  ||||||||| |||||||||||||    
T  44482309 tgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgattttctcaaatt 44482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 519
Target Start/End: Complemental strand, 47989576 - 47989517
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaatttt 519  Q
    |||||||||||||||  ||||| ||||||||||||||||||||  ||||||||| |||||    
T  47989576 tgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgatttt 47989517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 41877473 - 41877522
Alignment:
Q  485 caccgacacttgtaattacag--aattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||||||   |||||||||||||||||||||| ||||    
T  41877473 caccgacacttgtaattacactaaattatgtaattttctcaaattattag 41877522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 24577183 - 24577239
Alignment:
Q  479 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| |||||    
T  24577183 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagt 24577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 519
Target Start/End: Original strand, 30173742 - 30173801
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaatttt 519  Q
    |||||||||||| ||  ||||| ||||||||||||||||||||  || ||||||||||||    
T  30173742 tgtcgtgtccgatacggacacgacaccgacacttgtaattacactgagttatgtaatttt 30173801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 31015097 - 31015050
Alignment:
Q  487 ccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||||  ||||||||| ||||||||||||| ||||    
T  31015097 ccgacacttgtaattacactgaattatgtgattttctcaaattattag 31015050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 16766791 - 16766704
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||  ||||| ||| |||||||||||  ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  16766791 ccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattag 16766704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 532
Target Start/End: Original strand, 21395292 - 21395359
Alignment:
Q  466 gtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||||||| ||||| ||||||||||||||||||||   |||||||| ||||||||||||| ||||    
T  21395292 gtgtccgacactgacacgacaccgacacttgtaattacactaaattatgt-attttctcaaattattag 21395359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 31385013 - 31384926
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    |||||||  ||||| |||||||||| ||||| ||||| ||| ||||||||||||||||  ||||||||| ||||| ||||||| |||||    
T  31385013 ccggtgtaggacacgtgtcgtgtccaacact-acacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagt 31384926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 533
Target Start/End: Original strand, 8365493 - 8365572
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    ||||| |||||||||||| ||  ||||| ||||||||||||||||||||  ||||||||| || || ||||||| |||||    
T  8365493 gacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagt 8365572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 532
Target Start/End: Original strand, 9107335 - 9107422
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||  |||||| || |||||||||||  ||||| ||||||||||||||||||||  ||||| ||| ||||| ||||||| ||||    
T  9107335 ccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattag 9107422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 532
Target Start/End: Original strand, 9195728 - 9195806
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||| |||||  ||||| ||||||||| | ||||||||   |||||||| ||||||||||||| ||||    
T  9195728 gacacatgtcgtgtcagacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaattattag 9195806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 7977833 - 7977882
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||| ||||    
T  7977833 caccgacacttgtaattacactgaattatgtaattttttcaaattattag 7977882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 533
Target Start/End: Original strand, 10770671 - 10770727
Alignment:
Q  479 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| |||||    
T  10770671 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagt 10770727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 527
Target Start/End: Original strand, 5970088 - 5970155
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    |||||||||||||||  ||||| |||| ||| |||||||||||  ||||||||| ||||| |||||||    
T  5970088 tgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgattttttcaaatt 5970155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 504
Target Start/End: Complemental strand, 10294192 - 10294144
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca 504  Q
    |||||||||||||||||||||  ||||| ||||||||| | ||||||||    
T  10294192 gacacatgtcgtgtccgacaccaacacgacaccgacacatataattaca 10294144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 12696386 - 12696331
Alignment:
Q  479 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| ||| ||||||||||||||||  ||||||||||||||| ||||||| ||||    
T  12696386 acacgacactgacacttgtaattacactgaattatgtaattttttcaaattattag 12696331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 527
Target Start/End: Original strand, 15796256 - 15796341
Alignment:
Q  444 gttccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    ||||||||||| ||||| ||| |||||||||||  ||||| |||||||| |||||||||||  ||||||| | ||||| |||||||    
T  15796256 gttccggtgttggacacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattatatgattttttcaaatt 15796341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 532
Target Start/End: Original strand, 4987256 - 4987343
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||  ||||| |||||||||| ||||  ||||| |||| |||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  4987256 ccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgattttttcaaattattag 4987343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 504
Target Start/End: Original strand, 34185046 - 34185145
Alignment:
Q  407 catcaactatgaagcacatacactattcagattagacgtt--ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca 504  Q
    |||||||||||||||||  |||||  || |||||| |||   |||||||  |||||||||| |||||||||   ||||| ||||||||||||||||||||    
T  34185046 catcaactatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattaca 34185145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 14209197 - 14209119
Alignment:
Q  457 acacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    |||| |||||||||||||||  ||||| ||| ||||||||||||||||  ||||||||| ||||| | ||||| |||||    
T  14209197 acacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattttttaaaattattagt 14209119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 504
Target Start/End: Complemental strand, 14216976 - 14216929
Alignment:
Q  457 acacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca 504  Q
    |||| |||||||||||||||| ||||| ||| ||||||||||||||||    
T  14216976 acacgtgtcgtgtccgacactaacacgacacggacacttgtaattaca 14216929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 504
Target Start/End: Complemental strand, 14223105 - 14223058
Alignment:
Q  457 acacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca 504  Q
    |||| |||||||||||||||| ||||| ||| ||||||||||||||||    
T  14223105 acacgtgtcgtgtccgacactaacacgacacggacacttgtaattaca 14223058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 525
Target Start/End: Original strand, 4990972 - 4991012
Alignment:
Q  487 ccgacacttgtaattaca--gaattatgtaattttctcaaa 525  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  4990972 ccgacacttgtaattacactgaattatgtaattttctcaaa 4991012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 533
Target Start/End: Original strand, 750592 - 750671
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttagt 533  Q
    ||||| |||||||||||| ||  ||||| ||||||||||||||||| ||  ||||||||| || || ||||||| |||||    
T  750592 gacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattgcagcgaattatgtgatattttcaaattattagt 750671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 8039820 - 8039887
Alignment:
Q  467 tgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||  ||||| ||||||||| | ||||||||  ||||||| ||||||||||||||| ||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattattag 8039887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 532
Target Start/End: Complemental strand, 9800102 - 9800047
Alignment:
Q  479 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| |||||||||||  |||||||  ||||||||||||||||||||||| ||||    
T  9800102 acacgacaccgacacttacaattacacggaattatgtaattttctcaaattattag 9800047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 14832193 - 14832106
Alignment:
Q  447 ccggtgtttgacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||  ||||| |||||||||||| ||  ||||| ||| ||||||||||||||||  || |||||| ||||| ||||||| ||||    
T  14832193 ccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaattattag 14832106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 504
Target Start/End: Original strand, 41961624 - 41961672
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca 504  Q
    ||||| |||||||||||| ||  ||||| ||||||||||||||||||||    
T  41961624 gacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 41961672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 49651783 - 49651838
Alignment:
Q  479 acacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  49651783 acacgacaccgacacttgtaattacagtgaattatgtgattttttcaaattattag 49651838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 192250 - 192296
Alignment:
Q  483 ggcaccgacacttgtaattaca--gaattatgtaattttctcaaatt 527  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||    
T  192250 ggcacagacacttgtaattacaccgaattatgtaattttctcaaatt 192296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 532
Target Start/End: Complemental strand, 44860405 - 44860327
Alignment:
Q  456 gacacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||||||||||||||| ||||  ||||| ||||||||| | ||||||||  ||||||||  ||||||||||||| ||||    
T  44860405 gacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaattatgcgattttctcaaattattag 44860327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 462 - 525
Target Start/End: Original strand, 11223843 - 11223908
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaa 525  Q
    |||||||||||||||  ||| | ||||||||||||||||||||  ||||||||| ||||| |||||    
T  11223843 tgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaattatgttattttttcaaa 11223908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 532
Target Start/End: Original strand, 30717505 - 30717582
Alignment:
Q  457 acacatgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    |||| ||||||||||||||   ||||| || |||||||||||||||||  ||||||||| ||||| ||||||| ||||    
T  30717505 acacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgtgattttttcaaattattag 30717582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 63829 - 63780
Alignment:
Q  485 caccgacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  63829 caccgacacttgtaattgcactgaattatgtaattttctcaaattattag 63780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 532
Target Start/End: Complemental strand, 92859 - 92814
Alignment:
Q  489 gacacttgtaattaca--gaattatgtaattttctcaaatttttag 532  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||    
T  92859 gacacttgtaattacactgaattatgtaattttctcaaattattag 92814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 519
Target Start/End: Original strand, 3829 - 3888
Alignment:
Q  462 tgtcgtgtccgacactcacacggcaccgacacttgtaattaca--gaattatgtaatttt 519  Q
    |||||||||||||||  ||||| ||| ||||||||||||||||  ||||||||| |||||    
T  3829 tgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaattatgtgatttt 3888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University