View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_high_5 (Length: 516)
Name: NF15764_high_5
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 23 - 516
Target Start/End: Complemental strand, 373416 - 372922
Alignment:
| Q |
23 |
tagagtctcctttatcttttcatactattatcaaaatctctatacaactgagttttcttt-atcttttcatattattaccaattgttttaatcaactgat |
121 |
Q |
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| T |
373416 |
tagagtctcctttatcttttcatactattatcaaaatctctatacaactgagttttcttttatcttttcatattattaccaatttttttaatcaactgat |
373317 |
T |
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| Q |
122 |
ataaaattggttatgtcttaggtatgaggatgctcacgtgaggagtcaagatgagattactcttgcaggttaaccaagtggatgcataattttagttatg |
221 |
Q |
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| T |
373316 |
ataaaattggttatgtcttaggtatgaggatgctcacataaggagtcaagatgagattactcttgcaggttaactaagtggatgcataattttagttatg |
373217 |
T |
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| Q |
222 |
tattttttaagtaacacatgaaagtttaaaatattttaatgctactccatgtgcagatcgaagtcctattgtattggataattatgtggctatacgtttc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
373216 |
tattttttaagtaacacatgaaagtttaaaatattttaatgct-----atgtgcagatcgaagtcctattgtagtggataattatgtggctatacgtttc |
373122 |
T |
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| Q |
322 |
gatgaggtgcatgctttttcctttccttctcattccttttatatatatagaacttacgactttgatttgaataatg-----nnnnnnnnnnngagttaga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
373121 |
gatgaggtgcatgctttttcctttccttctcattccttttatatatatagaacttacgactttaatttgaataatgttttttttttttttttgagttaga |
373022 |
T |
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| Q |
417 |
aatttatttcatctacttgttttcttgtatttttaggacataccattcagtccttcaaatgcacaaccgctaccagattctgaggcaagaccaaatgagg |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
373021 |
aatttatttcatctacttgttttcttgtatttttaggacataccatttagtccttcaaatgcacaaccgctaccagattctgaggcaagaccaaatgagg |
372922 |
T |
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