View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_1 (Length: 820)
Name: NF15764_low_1
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 422 - 805
Target Start/End: Original strand, 34719579 - 34719963
Alignment:
| Q |
422 |
tttcagtttataaaaatatcatctcatttttattttaagtcctgtttactaaactttgaatagaaaccaacaaaaaaccgtttttactgaacattacaat |
521 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34719579 |
tttcagtttataaaaacatcatctcatttttattttaagtcctgtttactaaactttgaatagaaaccaacaaaaaaccgtttttactgaacattacaat |
34719678 |
T |
|
| Q |
522 |
gtttgaaaacagaaatgatattgttattaaaacttctatcatgaatataacacgagaagagagagatagtaaacatagtcattagaacgaaaatttaggt |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
34719679 |
gtttgaaaacagaaatgatattgttattaaaacttctatcatgaatataacacgagaagagacagatagtaaacatagtcattacaacgaaaatttaggt |
34719778 |
T |
|
| Q |
622 |
cctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaactatttggggtgagaacaatcctgttagtccaaccagtga |
721 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
34719779 |
cctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaactatttggggtgagaacaatcatgttagtccaactagtga |
34719878 |
T |
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| Q |
722 |
aaacacgactcaaggttctaagaacattgaaattcttgaaagcggtcgctatcttcacagtc-taagtttgagatccacatgctg |
805 |
Q |
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| T |
34719879 |
aaacacgactcaaggttctaagaacattgaaattcttgaaagcggttgctatcttcacagtcttgagtttgagatccacatgctg |
34719963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 34719963 - 34719579
Alignment:
| Q |
16 |
cagcatgtggatctcaaactta-gactgtgaagatagcgaccgctttcaagaatttcaatgttcttagaaccttgagtcgtgttttcactggttggacta |
114 |
Q |
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| T |
34719963 |
cagcatgtggatctcaaactcaagactgtgaagatagcaaccgctttcaagaatttcaatgttcttagaaccttgagtcgtgttttcactagttggacta |
34719864 |
T |
|
| Q |
115 |
acaggattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaaattttcgtt |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34719863 |
acatgattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaaattttcgtt |
34719764 |
T |
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| Q |
215 |
ctaatgactatgtttactatctctctcttctcgtgttatattcatgatagaagttttaataacaatatcatttctgttttcaaacattgtaatgttcagt |
314 |
Q |
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| T |
34719763 |
gtaatgactatgtttactatctgtctcttctcgtgttatattcatgatagaagttttaataacaatatcatttctgttttcaaacattgtaatgttcagt |
34719664 |
T |
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| Q |
315 |
aaaaacggttttttgttggtttctattcaaagtttagtaaacaggacttaaaataaaaatgagatgatatttttataaactgaaa |
399 |
Q |
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| T |
34719663 |
aaaaacggttttttgttggtttctattcaaagtttagtaaacaggacttaaaataaaaatgagatgatgtttttataaactgaaa |
34719579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 584 - 725
Target Start/End: Original strand, 34729251 - 34729392
Alignment:
| Q |
584 |
gagatagtaaacatagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttgttagatttaaact |
683 |
Q |
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|||||| ||||||||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||| |||| || ||||| |
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| T |
34729251 |
gagataataaacatagtcattacaacaaaaatttaggtcctataaataagaaatcatgagatggaatctagcttgcctataaatttattaggttgaaact |
34729350 |
T |
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| Q |
684 |
atttggggtgagaacaatcctgttagtccaaccagtgaaaac |
725 |
Q |
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|||| | || |||||| || | ||| ||||| ||||||||| |
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| T |
34729351 |
atttagagtaagaacattcatattaatccaaatagtgaaaac |
34729392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 34729392 - 34729251
Alignment:
| Q |
96 |
gttttcactggttggactaacaggattgttctcaccccaaatagtttaaatctaacaaatttacaggcaaggtagattccatctcatgatttctgatttg |
195 |
Q |
| |
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||||||||| ||||| ||| | || |||||| || | ||||||||| || |||| ||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
34729392 |
gttttcactatttggattaatatgaatgttcttactctaaatagtttcaacctaataaatttataggcaagctagattccatctcatgatttcttattta |
34729293 |
T |
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| Q |
196 |
taggacctaaattttcgttctaatgactatgtttactatctc |
237 |
Q |
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||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
34729292 |
taggacctaaatttttgttgtaatgactatgtttattatctc |
34729251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 670
Target Start/End: Original strand, 34725200 - 34725272
Alignment:
| Q |
597 |
tagtcattagaacgaaaatttaggtcctacaaatcagaaatcatgagatggaatctaccttgcctgtaaatttg |
670 |
Q |
| |
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|||| |||| |||||||||||||||||||||||| ||||||| |||||| |||||| | |||||||||| |||| |
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| T |
34725200 |
tagttattacaacgaaaatttaggtcctacaaataagaaatcgtgagat-gaatcttcgttgcctgtaagtttg |
34725272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 34725272 - 34725200
Alignment:
| Q |
151 |
caaatttacaggcaaggtagattccatctcatgatttctgatttgtaggacctaaattttcgttctaatgacta |
224 |
Q |
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|||| |||||||||| | |||||| |||||| ||||||| |||||||||||||||||||||||| |||| |||| |
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| T |
34725272 |
caaacttacaggcaacgaagattc-atctcacgatttcttatttgtaggacctaaattttcgttgtaataacta |
34725200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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