View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15764_low_11 (Length: 382)

Name: NF15764_low_11
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15764_low_11
NF15764_low_11
[»] chr8 (27 HSPs)
chr8 (213-365)||(33641297-33641449)
chr8 (76-171)||(33641160-33641255)
chr8 (72-111)||(25277728-25277767)
chr8 (72-109)||(12330585-12330622)
chr8 (72-109)||(29309563-29309600)
chr8 (72-108)||(14329622-14329658)
chr8 (72-108)||(34985344-34985380)
chr8 (72-107)||(960519-960554)
chr8 (72-107)||(27543647-27543682)
chr8 (72-111)||(27987293-27987332)
chr8 (72-111)||(28044595-28044634)
chr8 (74-108)||(12330332-12330366)
chr8 (73-111)||(25601970-25602008)
chr8 (72-110)||(27198141-27198179)
chr8 (72-110)||(29309796-29309834)
chr8 (72-109)||(3912502-3912539)
chr8 (72-105)||(40652621-40652654)
chr8 (72-109)||(40702032-40702069)
chr8 (72-109)||(43400669-43400706)
chr8 (72-112)||(4105302-4105341)
chr8 (72-111)||(27543407-27543447)
chr8 (76-108)||(27987552-27987584)
chr8 (76-108)||(28044854-28044886)
chr8 (75-111)||(28561430-28561466)
chr8 (75-111)||(28566928-28566964)
chr8 (72-108)||(30222109-30222145)
chr8 (72-112)||(43383012-43383052)
[»] chr7 (30 HSPs)
chr7 (231-365)||(33311858-33311992)
chr7 (72-110)||(33757407-33757445)
chr7 (72-110)||(1594146-1594184)
chr7 (72-110)||(6269525-6269563)
chr7 (72-106)||(44568849-44568883)
chr7 (72-109)||(19272471-19272508)
chr7 (72-109)||(23784582-23784619)
chr7 (74-109)||(9915649-9915684)
chr7 (74-109)||(9923561-9923596)
chr7 (72-107)||(13279439-13279474)
chr7 (72-111)||(13882599-13882638)
chr7 (72-107)||(23371449-23371484)
chr7 (72-107)||(38193216-38193251)
chr7 (72-107)||(39580188-39580223)
chr7 (75-109)||(9553398-9553432)
chr7 (72-110)||(10688455-10688493)
chr7 (72-106)||(13797633-13797667)
chr7 (72-109)||(21811413-21811451)
chr7 (73-111)||(26050426-26050464)
chr7 (73-111)||(26059785-26059823)
chr7 (72-109)||(39065381-39065418)
chr7 (72-108)||(10980618-10980654)
chr7 (72-108)||(14554470-14554506)
chr7 (72-108)||(24555923-24555959)
chr7 (72-108)||(24845637-24845673)
chr7 (72-108)||(26050174-26050210)
chr7 (72-108)||(26059533-26059569)
chr7 (72-108)||(31186667-31186703)
chr7 (76-108)||(35913310-35913342)
chr7 (72-111)||(38192958-38192998)
[»] chr4 (21 HSPs)
chr4 (239-307)||(50327293-50327361)
chr4 (72-112)||(20125440-20125480)
chr4 (72-110)||(21780119-21780157)
chr4 (77-110)||(20962191-20962224)
chr4 (72-109)||(24215763-24215800)
chr4 (72-108)||(11563539-11563575)
chr4 (72-108)||(37273417-37273453)
chr4 (72-112)||(38656077-38656117)
chr4 (75-111)||(51754225-51754261)
chr4 (72-107)||(550673-550708)
chr4 (72-107)||(50138488-50138523)
chr4 (75-110)||(50881447-50881482)
chr4 (75-110)||(54554380-54554415)
chr4 (72-110)||(22272927-22272965)
chr4 (75-109)||(29248240-29248274)
chr4 (72-109)||(16493516-16493553)
chr4 (72-105)||(27579516-27579549)
chr4 (72-108)||(6439184-6439220)
chr4 (72-108)||(35539802-35539838)
chr4 (72-108)||(50727589-50727625)
chr4 (72-108)||(50735603-50735639)
[»] chr3 (29 HSPs)
chr3 (239-307)||(4153101-4153169)
chr3 (72-109)||(36867879-36867916)
chr3 (72-109)||(51460785-51460822)
chr3 (72-108)||(6510214-6510250)
chr3 (72-108)||(49872971-49873007)
chr3 (75-110)||(37977531-37977566)
chr3 (72-107)||(47115584-47115619)
chr3 (72-107)||(49880759-49880794)
chr3 (72-107)||(54567765-54567800)
chr3 (72-110)||(27497796-27497834)
chr3 (72-110)||(27760286-27760324)
chr3 (72-109)||(13439627-13439664)
chr3 (72-109)||(14241212-14241249)
chr3 (72-109)||(18140938-18140975)
chr3 (72-109)||(18142219-18142256)
chr3 (76-109)||(20957195-20957228)
chr3 (72-105)||(22949248-22949281)
chr3 (76-105)||(24910957-24910986)
chr3 (72-109)||(25110083-25110120)
chr3 (72-109)||(30271542-30271579)
chr3 (75-108)||(46596094-46596127)
chr3 (75-108)||(46597533-46597566)
chr3 (72-109)||(53806818-53806855)
chr3 (72-111)||(4699971-4700011)
chr3 (72-104)||(8827447-8827479)
chr3 (72-108)||(12066228-12066264)
chr3 (72-112)||(17261020-17261060)
chr3 (75-107)||(46610009-46610041)
chr3 (72-111)||(51252306-51252346)
[»] chr1 (34 HSPs)
chr1 (72-110)||(13903393-13903431)
chr1 (72-112)||(47022091-47022131)
chr1 (72-110)||(25235771-25235809)
chr1 (72-109)||(18458824-18458861)
chr1 (72-109)||(26097049-26097086)
chr1 (72-112)||(2059448-2059488)
chr1 (72-108)||(24987607-24987643)
chr1 (72-108)||(26095813-26095849)
chr1 (72-108)||(28797383-28797419)
chr1 (72-108)||(32131925-32131961)
chr1 (72-111)||(4647895-4647934)
chr1 (72-107)||(10027999-10028034)
chr1 (72-111)||(13545575-13545614)
chr1 (75-110)||(14625367-14625402)
chr1 (72-107)||(33645014-33645049)
chr1 (75-110)||(38742406-38742441)
chr1 (72-109)||(8620214-8620252)
chr1 (74-108)||(9439426-9439460)
chr1 (72-110)||(28724322-28724360)
chr1 (72-110)||(30434277-30434315)
chr1 (72-105)||(1825296-1825329)
chr1 (74-111)||(2472608-2472645)
chr1 (72-112)||(16699126-16699167)
chr1 (72-105)||(21853418-21853451)
chr1 (75-108)||(43635834-43635867)
chr1 (72-108)||(2472389-2472425)
chr1 (72-104)||(15336378-15336410)
chr1 (72-108)||(21771062-21771098)
chr1 (72-108)||(22604684-22604720)
chr1 (72-108)||(27265933-27265968)
chr1 (72-108)||(28410913-28410949)
chr1 (74-106)||(31648610-31648642)
chr1 (72-107)||(34748301-34748337)
chr1 (72-108)||(35168030-35168066)
[»] scaffold0032 (1 HSPs)
scaffold0032 (72-111)||(91046-91085)
[»] chr2 (28 HSPs)
chr2 (72-111)||(28141684-28141723)
chr2 (72-109)||(15747749-15747786)
chr2 (72-109)||(17328090-17328127)
chr2 (72-108)||(19493470-19493506)
chr2 (72-108)||(22116154-22116190)
chr2 (72-108)||(34635705-34635741)
chr2 (72-108)||(38625157-38625193)
chr2 (72-111)||(10851713-10851752)
chr2 (72-107)||(19641446-19641481)
chr2 (72-107)||(19840039-19840074)
chr2 (72-111)||(22535450-22535489)
chr2 (72-111)||(23260316-23260355)
chr2 (72-107)||(29835102-29835137)
chr2 (72-107)||(37147551-37147586)
chr2 (72-111)||(38385931-38385970)
chr2 (72-110)||(3364583-3364621)
chr2 (72-109)||(7894222-7894260)
chr2 (74-108)||(16577371-16577405)
chr2 (72-110)||(19052195-19052233)
chr2 (75-109)||(23835797-23835831)
chr2 (72-109)||(758767-758804)
chr2 (72-105)||(30371618-30371651)
chr2 (75-108)||(38937533-38937566)
chr2 (72-105)||(43301882-43301915)
chr2 (75-111)||(16670495-16670531)
chr2 (72-108)||(30371384-30371420)
chr2 (74-106)||(38210865-38210897)
chr2 (72-108)||(41101032-41101068)
[»] chr6 (17 HSPs)
chr6 (72-109)||(3063505-3063542)
chr6 (72-109)||(29942465-29942502)
chr6 (72-112)||(31851753-31851793)
chr6 (72-107)||(10344050-10344085)
chr6 (72-111)||(10827051-10827090)
chr6 (72-107)||(13114398-13114433)
chr6 (72-107)||(14328668-14328703)
chr6 (72-107)||(14421678-14421713)
chr6 (72-111)||(22362959-22362998)
chr6 (75-108)||(56137-56170)
chr6 (72-109)||(22366240-22366277)
chr6 (76-109)||(22574056-22574089)
chr6 (72-109)||(24062165-24062202)
chr6 (74-107)||(24387785-24387818)
chr6 (76-108)||(6000697-6000729)
chr6 (72-108)||(22573801-22573837)
chr6 (74-106)||(34715928-34715960)
[»] chr5 (13 HSPs)
chr5 (72-109)||(29104442-29104479)
chr5 (72-109)||(38482316-38482353)
chr5 (72-108)||(10976769-10976805)
chr5 (72-108)||(22551521-22551557)
chr5 (72-111)||(5802411-5802450)
chr5 (72-110)||(31861488-31861526)
chr5 (75-108)||(11438338-11438371)
chr5 (74-107)||(12399610-12399643)
chr5 (75-108)||(15061848-15061881)
chr5 (75-108)||(15615102-15615135)
chr5 (72-104)||(20689050-20689082)
chr5 (72-112)||(31312793-31312833)
chr5 (72-108)||(33052816-33052852)
[»] scaffold0769 (1 HSPs)
scaffold0769 (72-108)||(4173-4209)
[»] scaffold0250 (1 HSPs)
scaffold0250 (75-111)||(10076-10112)
[»] scaffold0384 (2 HSPs)
scaffold0384 (72-107)||(4449-4484)
scaffold0384 (72-110)||(4246-4284)
[»] scaffold0142 (1 HSPs)
scaffold0142 (72-107)||(34848-34883)
[»] scaffold0031 (1 HSPs)
scaffold0031 (72-107)||(1827-1862)
[»] scaffold0010 (1 HSPs)
scaffold0010 (72-107)||(26308-26343)
[»] scaffold0002 (1 HSPs)
scaffold0002 (72-109)||(432393-432430)
[»] scaffold0450 (2 HSPs)
scaffold0450 (72-108)||(7858-7894)
scaffold0450 (72-108)||(8117-8153)
[»] scaffold0289 (1 HSPs)
scaffold0289 (75-111)||(9916-9952)
[»] scaffold0136 (1 HSPs)
scaffold0136 (72-108)||(658-694)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 213 - 365
Target Start/End: Original strand, 33641297 - 33641449
Alignment:
Q  213 tgatcagttcttgaactgtttatgtctctctcttccgtctctttccttcataacggtttaactcaaagtttcaccaccgtcatcacccttctcgtcacag 312  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33641297 tgatcagatcttgaactgtttatgtctctctcttccgtctctttccttcataacggtttaactcaaagtttcaccaccgtcatcacccttctcgtcacag 33641396  T
Q  313 ctacgacaacagccaccatctctttccttttcctttggcttctccgccccaac 365  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33641397 ctacgacaacaaccaccatctctttccttttcctttggcttctccgccccaac 33641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 33641160 - 33641255
Alignment:
Q  76 ctatattacagggggtaaagatctattaacccttttagttattatttagttccttttcttgtttcaacgagcatgttttgtgcacacactgacatg 171  Q
    |||||||||  |||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33641160 ctatattacgaggggtaaagacctattaaacattttagttattatttagttccttttcttgtttcaacgagcatgttttgtgcacacactgacatg 33641255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 25277728 - 25277767
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  25277728 tgacctatattacagggggtaaagacctattaaccctttt 25277767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 12330585 - 12330622
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12330585 tgacatatattacagggggtaaagatctattaaccctt 12330622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 29309600 - 29309563
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  29309600 tgacctatattacagggggtaaagacctattaaccctt 29309563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 14329622 - 14329658
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  14329622 tgacctatattacagggggtaaagacctattaaccct 14329658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 34985344 - 34985380
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34985344 tgacctatattacagggggtaaagacctattaaccct 34985380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 960519 - 960554
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  960519 tgacctatattacagggggtaaagacctattaaccc 960554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 27543647 - 27543682
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  27543647 tgacctatattacagggggtaaagacctattaaccc 27543682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 27987332 - 27987293
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  27987332 tgacctatattatagggggtaaagacctattaaccctttt 27987293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 28044634 - 28044595
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  28044634 tgacctatattatagggggtaaagacctattaaccctttt 28044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 12330366 - 12330332
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| |||||||||||    
T  12330366 acctatattacagggggtaaagacctattaaccct 12330332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 25601970 - 25602008
Alignment:
Q  73 gacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  25601970 gacctatattacatggggtaaagacctattaaccctttt 25602008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 27198179 - 27198141
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  27198179 tgacctatattacaggggataaagacctattaacccttt 27198141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 29309796 - 29309834
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  29309796 tgacctatattacagggggtaaaaacctattaacccttt 29309834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 3912502 - 3912539
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||||||||||||||  |||||||||||    
T  3912502 tgacctatattacagggggtaaagacttattaaccctt 3912539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 40652654 - 40652621
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||| ||||||||    
T  40652654 tgacctatattacagggggtaaagacctattaac 40652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 40702032 - 40702069
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  40702032 tgacctatattacagggggtaaaggcctattaaccctt 40702069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 43400706 - 43400669
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  43400706 tgacatatattacagggggtaaagacctattaaccctt 43400669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 4105302 - 4105341
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  4105302 tgacctatattacagggg-taaagacctattaaccctttta 4105341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 27543447 - 27543407
Alignment:
Q  72 tgacctatattacaggggg-taaagatctattaaccctttt 111  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  27543447 tgacctatattacaggggggtaaagacctattaaccctttt 27543407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 27987552 - 27987584
Alignment:
Q  76 ctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||| |||||||||||    
T  27987552 ctatattacagggggtaaagacctattaaccct 27987584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 28044854 - 28044886
Alignment:
Q  76 ctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||| |||||||||||    
T  28044854 ctatattacagggggtaaagacctattaaccct 28044886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 28561466 - 28561430
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  28561466 cctatattacagggggtaaagctctattaaccttttt 28561430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 28566964 - 28566928
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  28566964 cctatattacagggggtaaagctctattaaccttttt 28566928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 30222109 - 30222145
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||  |||||||||||    
T  30222109 tgacctatattacagggggtaaagcactattaaccct 30222145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 43383012 - 43383052
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    ||||||||||||||||||||||||  | |||||||||||||    
T  43383012 tgacctatattacagggggtaaagcaccattaaccctttta 43383052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 231 - 365
Target Start/End: Complemental strand, 33311992 - 33311858
Alignment:
Q  231 tttatgtctctctcttccgtctctttccttcataacggtttaactcaaagtttcaccaccgtcatcacccttctcgtcacagctacgacaacagccacca 330  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||| | ||||    
T  33311992 tttatgtttctcttttccgtctctttccttcataactgtttaactcaaggtttcaccaccatcatcacccttctcttcacagctccggcaacaactacca 33311893  T
Q  331 tctctttccttttcctttggcttctccgccccaac 365  Q
    | ||||||||||||||||||||||||| |||||||    
T  33311892 tgtctttccttttcctttggcttctccaccccaac 33311858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 33757445 - 33757407
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33757445 tgacctatattacagggggtaaagatctattaacccttt 33757407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 1594146 - 1594184
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  1594146 tgacctatattacagggggtaaagacctattaacccttt 1594184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 6269563 - 6269525
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  6269563 tgacctatattacagggggtaaagacctattaacccttt 6269525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 44568883 - 44568849
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacc 106  Q
    |||||||||||||||||||||||||||||||||||    
T  44568883 tgacctatattacagggggtaaagatctattaacc 44568849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 19272471 - 19272508
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19272471 tgacctatattacagggggtaaagacctattaaccctt 19272508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 23784619 - 23784582
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  23784619 tgacctatattacagggggtaaagacctattaaccctt 23784582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 9915684 - 9915649
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9915684 acctatattacagggggtaaagacctattaaccctt 9915649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 9923596 - 9923561
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9923596 acctatattacagggggtaaagacctattaaccctt 9923561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 13279439 - 13279474
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  13279439 tgacctatattacagggggtaaagacctattaaccc 13279474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 13882638 - 13882599
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  13882638 tgacctatattacagagggtaaagacctattaaccctttt 13882599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 23371484 - 23371449
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  23371484 tgacctatattacagggggtaaagacctattaaccc 23371449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 38193216 - 38193251
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  38193216 tgacctatattacagggggtaaagacctattaaccc 38193251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 39580188 - 39580223
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  39580188 tgacctatattacagggggtaaagacctattaaccc 39580223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 9553432 - 9553398
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||||||||||| ||||||||||||    
T  9553432 cctatattacagggggtaaagacctattaaccctt 9553398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 10688493 - 10688455
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  10688493 tgacctatattacagagggtaaagacctattaacccttt 10688455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 13797633 - 13797667
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacc 106  Q
    ||||||||||||||||||||||||| |||||||||    
T  13797633 tgacctatattacagggggtaaagacctattaacc 13797667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 21811451 - 21811413
Alignment:
Q  72 tgacctatattacaggggg-taaagatctattaaccctt 109  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  21811451 tgacctatattacagggggataaagatctattaaccctt 21811413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 26050426 - 26050464
Alignment:
Q  73 gacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  26050426 gacctatattacaggggttaaagacctattaaccctttt 26050464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 26059785 - 26059823
Alignment:
Q  73 gacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  26059785 gacctatattacaggggttaaagacctattaaccctttt 26059823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 39065418 - 39065381
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  39065418 tgacctatattacagggggtaaagacctattaatcctt 39065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 10980618 - 10980654
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  10980618 tgacctatattacagagggtaaagacctattaaccct 10980654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 14554470 - 14554506
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||  |||||||||||    
T  14554470 tgacctatattacagggggtaaaggcctattaaccct 14554506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 24555923 - 24555959
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| | |||||||||||    
T  24555923 tgacctatattacagggggtaaaaacctattaaccct 24555959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 24845673 - 24845637
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||| |||||||| |||||||||||    
T  24845673 tgacctatattacaggaggtaaagacctattaaccct 24845637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 26050210 - 26050174
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||| |||||||||||| |||||||||||    
T  26050210 tgacctatattagagggggtaaagacctattaaccct 26050174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 26059569 - 26059533
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||| |||||||||||| |||||||||||    
T  26059569 tgacctatattagagggggtaaagacctattaaccct 26059533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 31186703 - 31186667
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  31186703 tgacctatattacagagggtaaagacctattaaccct 31186667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 35913310 - 35913342
Alignment:
Q  76 ctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||| |||||||||||    
T  35913310 ctatattacagggggtaaagacctattaaccct 35913342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 38192998 - 38192958
Alignment:
Q  72 tgacctatattacaggggg-taaagatctattaaccctttt 111  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  38192998 tgacctatattacaggggggtaaagacctattaaccctttt 38192958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 50327293 - 50327361
Alignment:
Q  239 tctctcttccgtctctttccttcataacggtttaactcaaagtttcaccaccgtcatcacccttctcgt 307  Q
    ||||||||||||||||||| ||   ||| ||||||||||| ||||||||||||||||||||||||||||    
T  50327293 tctctcttccgtctctttcttttggaactgtttaactcaaggtttcaccaccgtcatcacccttctcgt 50327361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 20125440 - 20125480
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  20125440 tgacctatattacagggggtaaagacctattaaccctttta 20125480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 21780157 - 21780119
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21780157 tgacctatattacagggggtaaagacctattaacccttt 21780119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 20962224 - 20962191
Alignment:
Q  77 tatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||||||||||||||    
T  20962224 tatattacagggggtaaagatctattaacccttt 20962191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 24215763 - 24215800
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24215763 tgacctatattacagggggtaaagacctattaaccctt 24215800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 11563539 - 11563575
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11563539 tgacctatattacagggggtaaagacctattaaccct 11563575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 37273417 - 37273453
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  37273417 tgacctatattacagggggtaaagacctattaaccct 37273453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 38656077 - 38656117
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  38656077 tgacctatattatagggggtaaagacctattaaccctttta 38656117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 51754225 - 51754261
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||| |||||||||||||||    
T  51754225 cctatattacagggggtaaagctctattaaccctttt 51754261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 550708 - 550673
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  550708 tgacctatattacagggggtaaagacctattaaccc 550673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 50138523 - 50138488
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  50138523 tgacctatattacagggggtaaagacctattaaccc 50138488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 50881447 - 50881482
Alignment:
Q  75 cctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||||||| |||||||||||||    
T  50881447 cctatattacagggggtaaagacctattaacccttt 50881482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 54554415 - 54554380
Alignment:
Q  75 cctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||||||| |||||||||||||    
T  54554415 cctatattacagggggtaaagacctattaacccttt 54554380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 22272965 - 22272927
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  22272965 tgacctatattacagggggtaaaaacctattaacccttt 22272927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 29248274 - 29248240
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||||||||||| ||||||||||||    
T  29248274 cctatattacagggggtaaagacctattaaccctt 29248240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 16493553 - 16493516
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  16493553 tgacctatattacaggaggtaaagacctattaaccctt 16493516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 27579549 - 27579516
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||| ||||||||    
T  27579549 tgacctatattacagggggtaaagacctattaac 27579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 6439220 - 6439184
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||  |||||||||||    
T  6439220 tgacctatattacagggggtaaagcactattaaccct 6439184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 35539802 - 35539838
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| | |||||||||||    
T  35539802 tgacctatattacagggggtaaatacctattaaccct 35539838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 50727625 - 50727589
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| | |||||||||||    
T  50727625 tgacctatattacagggggtaaaaacctattaaccct 50727589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 50735639 - 50735603
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| | |||||||||||    
T  50735639 tgacctatattacagggggtaaaaacctattaaccct 50735603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 4153169 - 4153101
Alignment:
Q  239 tctctcttccgtctctttccttcataacggtttaactcaaagtttcaccaccgtcatcacccttctcgt 307  Q
    ||||||||||||||||||| |||  ||| ||||||||||| |||||||||||||||||| |||||||||    
T  4153169 tctctcttccgtctctttctttcggaactgtttaactcaaggtttcaccaccgtcatcatccttctcgt 4153101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 36867879 - 36867916
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||| |||||||||||||||||||||||||    
T  36867879 tgacctatattatagggggtaaagatctattaaccctt 36867916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 51460785 - 51460822
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  51460785 tgacctatattacagggggtaaagacctattaaccctt 51460822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 6510250 - 6510214
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6510250 tgacctatattacagggggtaaagacctattaaccct 6510214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 49872971 - 49873007
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  49872971 tgacctatattacagggggtaaagacctattaaccct 49873007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 37977531 - 37977566
Alignment:
Q  75 cctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||||||| |||||||||||||    
T  37977531 cctatattacagggggtaaagacctattaacccttt 37977566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 47115584 - 47115619
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47115584 tgacctatattacagggggtaaagacctattaaccc 47115619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 49880759 - 49880794
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  49880759 tgacctatattacagggggtaaagacctattaaccc 49880794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 54567765 - 54567800
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  54567765 tgacctatattacagggggtaaagacctattaaccc 54567800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 27497834 - 27497796
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  27497834 tgacttatattacagggggtaaagacctattaacccttt 27497796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 27760324 - 27760286
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  27760324 tgacctatattacagggggtaaagacttattaacccttt 27760286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 13439664 - 13439627
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||||||||||||| | |||||||||||    
T  13439664 tgacctatattacagggggtaaagctttattaaccctt 13439627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 14241249 - 14241212
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  14241249 tgacctatattacagggggtaaagacctataaaccctt 14241212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 18140975 - 18140938
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  18140975 tgacctatattacagggggtaaaggcctattaaccctt 18140938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 18142219 - 18142256
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  18142219 tgacctatattacagggggtaaaggcctattaaccctt 18142256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 20957195 - 20957228
Alignment:
Q  76 ctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||| ||||||||||||    
T  20957195 ctatattacagggggtaaagacctattaaccctt 20957228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 22949281 - 22949248
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||| ||||||||    
T  22949281 tgacctatattacagggggtaaagacctattaac 22949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 24910957 - 24910986
Alignment:
Q  76 ctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||||||||    
T  24910957 ctatattacagggggtaaagatctattaac 24910986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 25110083 - 25110120
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  25110083 tgacctatattacagggtgtaaagacctattaaccctt 25110120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 30271579 - 30271542
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  30271579 tgacctatattacagagggtaaagaactattaaccctt 30271542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 46596127 - 46596094
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||| ||||||||||||    
T  46596127 cctatattacagggggtaaagctctattaaccct 46596094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 46597533 - 46597566
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||||| |||||||||||    
T  46597533 cctatattacagggggtaaagacctattaaccct 46597566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 53806818 - 53806855
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  53806818 tgacctatattacaaggggtaaagacctattaaccctt 53806855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 4700011 - 4699971
Alignment:
Q  72 tgacctatattacaggg-ggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  4700011 tgacctatattacagggaggtaaagacctattaaccctttt 4699971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 8827447 - 8827479
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaa 104  Q
    ||||||||||||||||||||||||| |||||||    
T  8827447 tgacctatattacagggggtaaagacctattaa 8827479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 12066264 - 12066228
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| | |||||||||||    
T  12066264 tgacctatattacagggggtaaaaaactattaaccct 12066228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 17261060 - 17261020
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    ||||||||||||||||||||||||  | |||||||||||||    
T  17261060 tgacctatattacagggggtaaagcaccattaaccctttta 17261020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 46610041 - 46610009
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccc 107  Q
    |||||||||||||||||||||| ||||||||||    
T  46610041 cctatattacagggggtaaagacctattaaccc 46610009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 51252306 - 51252346
Alignment:
Q  72 tgacctatattacaggggg-taaagatctattaaccctttt 111  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  51252306 tgacctatattacagggggataaagacctattaaccctttt 51252346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 13903393 - 13903431
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13903393 tgacctatattacagggggtaaagatctattaacccttt 13903431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 47022091 - 47022131
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  47022091 tgacctatattacagggggtaaagacctattaaccctttta 47022131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 25235809 - 25235771
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  25235809 tgacctatattacagggggtaaagacctattaacccttt 25235771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 18458824 - 18458861
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  18458824 tgacctatattacagggggtaaagacctattaaccctt 18458861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 26097049 - 26097086
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26097049 tgacctatattacagggggtaaagacctattaaccctt 26097086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 2059448 - 2059488
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  2059448 tgacctatattacagggggtaaagacctattaatcctttta 2059488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 24987643 - 24987607
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  24987643 tgacctatattacagggggtaaagacctattaaccct 24987607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 26095849 - 26095813
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26095849 tgacctatattacagggggtaaagacctattaaccct 26095813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 28797383 - 28797419
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28797383 tgacctatattacagggggtaaagatttattaaccct 28797419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 32131925 - 32131961
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  32131925 tgacctatattacagggggtaaagacctattaaccct 32131961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 4647895 - 4647934
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  4647895 tgacctatattacagagggtaaagatctattaaccttttt 4647934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 10027999 - 10028034
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10027999 tgacctatattacagggggtaaagacctattaaccc 10028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 13545614 - 13545575
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  13545614 tgacatatattacagggggtaaagacctattaaccctttt 13545575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 14625402 - 14625367
Alignment:
Q  75 cctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||||||| |||||||||||||    
T  14625402 cctatattacagggggtaaagacctattaacccttt 14625367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 33645049 - 33645014
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33645049 tgacctatattacagggggtaaagatctaataaccc 33645014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 38742406 - 38742441
Alignment:
Q  75 cctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||| ||||||||||||||    
T  38742406 cctatattacagggggtaaagctctattaacccttt 38742441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 8620214 - 8620252
Alignment:
Q  72 tgacctatattacagggg-gtaaagatctattaaccctt 109  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  8620214 tgacctatattacaggggggtaaagatctattaaccctt 8620252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 9439426 - 9439460
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| |||||||||||    
T  9439426 acctatattacagggggtaaagacctattaaccct 9439460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 28724360 - 28724322
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  28724360 tgacctattttacagggggtaaagacctattaacccttt 28724322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 30434315 - 30434277
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  30434315 tgacctatattacagggggtaaagaccgattaacccttt 30434277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 1825329 - 1825296
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||| ||||||||    
T  1825329 tgacctatattacagggggtaaagacctattaac 1825296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 2472608 - 2472645
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  2472608 acctatattacagggggtaaagacctattaaccatttt 2472645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 16699126 - 16699167
Alignment:
Q  72 tgacctatattac-agggggtaaagatctattaaccctttta 112  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  16699126 tgacctatattaccagggggtaaagacctattaaccctttta 16699167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 21853451 - 21853418
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||| ||||||||    
T  21853451 tgacctatattacagggggtaaagacctattaac 21853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 43635867 - 43635834
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||||| |||||||||||    
T  43635867 cctatattacagggggtaaagacctattaaccct 43635834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 2472425 - 2472389
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||| |||||| |||||||||||    
T  2472425 tgacctatattacaggggttaaagacctattaaccct 2472389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 15336410 - 15336378
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaa 104  Q
    ||||||||||||||||||||||||| |||||||    
T  15336410 tgacctatattacagggggtaaagacctattaa 15336378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 21771062 - 21771098
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||  |||||||||||    
T  21771062 tgacctatattacagggggtaaagcactattaaccct 21771098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 22604684 - 22604720
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||| |||||| |||||||||||    
T  22604684 tgacctatattacaggggttaaagacctattaaccct 22604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 27265933 - 27265968
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27265933 tgacctatattacagggggtaaa-atctattaaccct 27265968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 28410949 - 28410913
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||| |||||| |||||||||||    
T  28410949 tgacctatattacaggggataaagacctattaaccct 28410913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 31648610 - 31648642
Alignment:
Q  74 acctatattacagggggtaaagatctattaacc 106  Q
    |||||||||||||||||||||| ||||||||||    
T  31648610 acctatattacagggggtaaaggtctattaacc 31648642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 34748301 - 34748337
Alignment:
Q  72 tgacctatattacagg-gggtaaagatctattaaccc 107  Q
    |||||||||||||||| ||||||||||||||||||||    
T  34748301 tgacctatattacaggagggtaaagatctattaaccc 34748337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 35168030 - 35168066
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||  |||||||||||    
T  35168030 tgacctatattacagggggtaaagcactattaaccct 35168066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 91085 - 91046
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  91085 tgacctatattacagggggtaaagacctattaaccctttt 91046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 28141723 - 28141684
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  28141723 tgacctatattacagggggtaaagatctattaatcctttt 28141684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 15747786 - 15747749
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15747786 tgacctatattacagggggtaaaggtctattaaccctt 15747749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 17328127 - 17328090
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17328127 tgacctatattacagggggtaaagacctattaaccctt 17328090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 19493470 - 19493506
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  19493470 tgacctatattacagggggtaaagacctattaaccct 19493506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 22116190 - 22116154
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  22116190 tgacctatattacagggggtaaagacctattaaccct 22116154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 34635741 - 34635705
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34635741 tgacctatattacagggggtaaagacctattaaccct 34635705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 38625157 - 38625193
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38625157 tgacatatattacagggggtaaagatctattaaccct 38625193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 10851713 - 10851752
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  10851713 tgacctatattacagggagtaaagatctattaaccttttt 10851752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 19641481 - 19641446
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  19641481 tgacctatattacagggggtaaagacctattaaccc 19641446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 19840074 - 19840039
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  19840074 tgacctatattacagggggtaaagacctattaaccc 19840039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 22535489 - 22535450
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  22535489 tgacctatattaaagggggtaaagacctattaaccctttt 22535450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 23260355 - 23260316
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  23260355 tgacctatattacagggagtaaagacctattaaccctttt 23260316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 29835137 - 29835102
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29835137 tgacctatattacagggggtaaagacctattaaccc 29835102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 37147586 - 37147551
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37147586 tgacctatattacagggggtaaagacctattaaccc 37147551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 38385970 - 38385931
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  38385970 tgacctatattacagggggtaaagacctattaaccttttt 38385931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 3364583 - 3364621
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  3364583 tgacttatattacagggggtaaagacctattaacccttt 3364621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 7894222 - 7894260
Alignment:
Q  72 tgacctatattacag-ggggtaaagatctattaaccctt 109  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7894222 tgacctatattacagaggggtaaagatctattaaccctt 7894260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 16577371 - 16577405
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||| |||||||||||    
T  16577371 acctatattacagggggtaaagacctattaaccct 16577405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 19052195 - 19052233
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  19052195 tgacatatattacagggggtaaagacctattaacccttt 19052233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 23835797 - 23835831
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||||||||||||| ||||||||||||    
T  23835797 cctatattacagggggtaaagacctattaaccctt 23835831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 758767 - 758804
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  758767 tgacctatattacagggggtaaagcactattaaccctt 758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 30371618 - 30371651
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||| ||||||||    
T  30371618 tgacctatattacagggggtaaagacctattaac 30371651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 38937533 - 38937566
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||||| |||||||||||    
T  38937533 cctatattacagggggtaaagacctattaaccct 38937566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 43301915 - 43301882
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaac 105  Q
    ||||||||||||||||||||||||| ||||||||    
T  43301915 tgacctatattacagggggtaaagacctattaac 43301882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 16670531 - 16670495
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctttt 111  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  16670531 cctatattacagggggtaaagacctattaaccttttt 16670495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 30371420 - 30371384
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  30371420 tgacctatattacagggagtaaagacctattaaccct 30371384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 38210897 - 38210865
Alignment:
Q  74 acctatattacagggggtaaagatctattaacc 106  Q
    ||||||||||||||||||||||| |||||||||    
T  38210897 acctatattacagggggtaaagacctattaacc 38210865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 41101032 - 41101068
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||  |||||||||||    
T  41101032 tgacctatattacagggggtaaagcactattaaccct 41101068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 3063505 - 3063542
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  3063505 tgacctatattacagggggtaaagacctattaaccctt 3063542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 29942465 - 29942502
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  29942465 tgacctatattacagggggtaaagacctattaaccctt 29942502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 31851793 - 31851753
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  31851793 tgacctatattacaggggataaagacctattaaccctttta 31851753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 10344085 - 10344050
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10344085 tgacctatattacagggggtaaagacctattaaccc 10344050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 10827090 - 10827051
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  10827090 tgacctatattacagggagtaaagatctattaactctttt 10827051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 13114433 - 13114398
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  13114433 tgacctatattacagggggtaaagacctattaaccc 13114398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 14328668 - 14328703
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14328668 tgacctatattacagggggtaaagacctattaaccc 14328703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 14421678 - 14421713
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14421678 tgacctatattacagggggtaaagacctattaaccc 14421713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 22362959 - 22362998
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  22362959 tgacctatattacagggggtaaagcactattaaccctttt 22362998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 56137 - 56170
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||||| |||||||||||    
T  56137 cctatattacagggggtaaagacctattaaccct 56170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 22366240 - 22366277
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  22366240 tgacctatattgcagggggtaaagacctattaaccctt 22366277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 22574056 - 22574089
Alignment:
Q  76 ctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||| ||||||||||||    
T  22574056 ctatattacagggggtaaagacctattaaccctt 22574089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 24062202 - 24062165
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  24062202 tgacctatattatagggggtaaagacctattaaccctt 24062165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 24387785 - 24387818
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  24387785 acctatattacagggggtaaagacctattaaccc 24387818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 6000697 - 6000729
Alignment:
Q  76 ctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||| ||||||||||||    
T  6000697 ctatattacagggggtaaagctctattaaccct 6000729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 22573837 - 22573801
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||| |||||||||||| |||||||||||    
T  22573837 tgacctatattatagggggtaaagacctattaaccct 22573801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 34715928 - 34715960
Alignment:
Q  74 acctatattacagggggtaaagatctattaacc 106  Q
    ||||||||||||||||||||||| |||||||||    
T  34715928 acctatattacagggggtaaagaactattaacc 34715960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 29104479 - 29104442
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  29104479 tgacctatattacagggggtaaagacctattaaccctt 29104442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 38482353 - 38482316
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  38482353 tgacctatattacagggggtaaagacctattaaccctt 38482316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 10976769 - 10976805
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  10976769 tgacctatattacagggggtaaagacctattaaccct 10976805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 22551557 - 22551521
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  22551557 tgacctatattacagggggtaaagacctattaaccct 22551521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 5802450 - 5802411
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  5802450 tgacctatattgcagggggtaaagatctattaaccttttt 5802411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 31861526 - 31861488
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  31861526 tgacctatattacaggggataaagacctattaacccttt 31861488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 11438371 - 11438338
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||| ||||||||||||    
T  11438371 cctatattacagggggtaaagctctattaaccct 11438338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 12399610 - 12399643
Alignment:
Q  74 acctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||| ||||||||||    
T  12399610 acctatattacagggggtaaagacctattaaccc 12399643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 15061848 - 15061881
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||||| |||||||||||    
T  15061848 cctatattacagggggtaaagacctattaaccct 15061881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 15615135 - 15615102
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||||||||||| |||||||||||    
T  15615135 cctatattacagggggtaaagacctattaaccct 15615102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 20689050 - 20689082
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaa 104  Q
    ||||||||||||||||||||||||| |||||||    
T  20689050 tgacctatattacagggggtaaagacctattaa 20689082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 31312793 - 31312833
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctttta 112  Q
    |||||||||||||||||||||||   |||||||||||||||    
T  31312793 tgacctatattacagggggtaaaacactattaaccctttta 31312833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 33052852 - 33052816
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||||||||||||| |||||||||| |||||||||||    
T  33052852 tgacctatattacaaggggtaaagacctattaaccct 33052816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 4173 - 4209
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4173 tgacctatattacagggggtaaagacctattaaccct 4209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 10112 - 10076
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctttt 111  Q
    |||||||||||||||||||||| ||||||||||||||    
T  10112 cctatattacagggggtaaagacctattaaccctttt 10076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 4449 - 4484
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  4449 tgacctatattacagggggtaaagacctattaaccc 4484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 4284 - 4246
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaacccttt 110  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  4284 tgacctatattacagggagtaaagacctattaacccttt 4246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 34848 - 34883
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34848 tgacctatattacagggggtaaagacctattaaccc 34883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 1862 - 1827
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1862 tgacctatattacagggggtaaagacctattaaccc 1827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 26343 - 26308
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccc 107  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26343 tgacctatattacagggggtaaagacctattaaccc 26308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 432430 - 432393
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccctt 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  432430 tgacctatattacagggggtaaagtactattaaccctt 432393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 7894 - 7858
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    |||| |||||||||||||||||||| |||||||||||    
T  7894 tgacatatattacagggggtaaagacctattaaccct 7858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 8117 - 8153
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  8117 tgacctatattacagtgggtaaagacctattaaccct 8153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 9952 - 9916
Alignment:
Q  75 cctatattacagggggtaaagatctattaaccctttt 111  Q
    ||||||||||||||||||||| | |||||||||||||    
T  9952 cctatattacagggggtaaagttttattaaccctttt 9916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 658 - 694
Alignment:
Q  72 tgacctatattacagggggtaaagatctattaaccct 108  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  658 tgacctatattacagagggtaaagacctattaaccct 694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University