View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_12 (Length: 373)
Name: NF15764_low_12
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 35905120 - 35904775
Alignment:
| Q |
10 |
aggagcagagaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaag |
109 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905120 |
aggatcagggaagagtactatgggcagtggtgcaaatttagccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaag |
35905021 |
T |
|
| Q |
110 |
aattttgatgagtccaatgttattggtgtaggagggtttggaaaggtttacaagggtgttattgataatggtgttaaagtggctattaagagatcaaatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905020 |
aattttgatgagtccaatgttattggtgtaggagggtttggaaaggtttacaagggtgttattgataatggtgttaaagtggctattaagagatcaaatc |
35904921 |
T |
|
| Q |
210 |
cacaatcagaacaaggagtaaatgaatttcaaactgaaattgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtgagga |
309 |
Q |
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| T |
35904920 |
cacaatcagaacaaggagtaaatgaatttcaaactgaaattgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtgagga |
35904821 |
T |
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| Q |
310 |
agatgaggaaatgtgtttggtttatgattacatggctcatggaacc |
355 |
Q |
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| T |
35904820 |
agatgaggaaatgtgtttggtttatgattacatggctcatggaacc |
35904775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 50 - 356
Target Start/End: Original strand, 47624163 - 47624469
Alignment:
| Q |
50 |
gccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatgagtccaatgttattggtgtaggagggtttg |
149 |
Q |
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| T |
47624163 |
gccatgacccaaggtctatgtcgctatttttcgttacaagagataaagcaagcaaccaacagttttgatgagtccaacgtgattggagttggtggatttg |
47624262 |
T |
|
| Q |
150 |
gaaaggtttacaagggtgttattgataatggtgttaaagtggctattaagagatcaaatccacaatcagaacaaggagtaaatgaatttcaaactgaaat |
249 |
Q |
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| T |
47624263 |
gaaaggtttacaagggtgtcattgataatggaatgctagtggcgattaagaggtcaaatccacagtcagaacaaggagtcaatgaattccagaccgagat |
47624362 |
T |
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| Q |
250 |
tgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtgaggaagatgaggaaatgtgtttggtttatgattacatggctcat |
349 |
Q |
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| T |
47624363 |
tgagatgctttctaagttgagacacaagcatttggtgtccttgattggattttgcgaggaagataatgagatgtgtttggtttatgactacatggctctt |
47624462 |
T |
|
| Q |
350 |
ggaacct |
356 |
Q |
| |
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||||||| |
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| T |
47624463 |
ggaacct |
47624469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 352
Target Start/End: Complemental strand, 13974106 - 13973918
Alignment:
| Q |
164 |
ggtgttattgataatggtgttaaagtggctattaagagatcaaatccacaatcagaacaaggagtaaatgaatttcaaactgaaattgagatgctttcaa |
263 |
Q |
| |
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||||| |||||| | || ||| |||| ||| | |||||| ||||||||||||||||||||| | |||||||| || |||||||| | ||| | || | |
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| T |
13974106 |
ggtgtgattgatgaaggggttcaagttgctgtcaagagaggaaatccacaatcagaacaaggtatcaatgaattccagactgaaatccaaatgttgtcta |
13974007 |
T |
|
| Q |
264 |
agcttagacataaacatttagtgtctttgattggtttttgtgaggaagatgaggaaatgtgtttggtttatgattacatggctcatgga |
352 |
Q |
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|||||||||||| |||||| || || ||||||| | |||||| ||| |||| |||||| | | |||||||| |||||| || ||||| |
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| T |
13974006 |
agcttagacatagacatttggtttcaatgattggatattgtgatgaaaatgaagaaatgattcttgtttatgagtacatgcctaatgga |
13973918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 11380291 - 11380400
Alignment:
| Q |
245 |
gaaattgagatgctttcaaagcttagacataaacatttagtgtctttgattggtttttgtgaggaagatgag-gaaatgtgtttggtttatgattacatg |
343 |
Q |
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|||||||||||||| ||||| || ||||| | |||| | ||||||||||||||||| ||||| | ||| || |||||| |||||||||||| |||||| |
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| T |
11380291 |
gaaattgagatgctctcaaaactaagacacagacatcttgtgtctttgattggtttctgtgaag-agaaaagtgaaatgattttggtttatgagtacatg |
11380389 |
T |
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| Q |
344 |
gctcatggaac |
354 |
Q |
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| T |
11380390 |
gcaaatggaac |
11380400 |
T |
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