View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15764_low_13 (Length: 341)

Name: NF15764_low_13
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15764_low_13
NF15764_low_13
[»] chr3 (3 HSPs)
chr3 (9-209)||(53534844-53535042)
chr3 (177-209)||(53533654-53533686)
chr3 (177-209)||(53536951-53536983)
[»] chr1 (3 HSPs)
chr1 (9-209)||(4753423-4753621)
chr1 (9-182)||(38202432-38202604)
chr1 (177-209)||(4756677-4756709)
[»] chr8 (2 HSPs)
chr8 (9-209)||(42915883-42916081)
chr8 (177-209)||(42919146-42919178)
[»] chr7 (3 HSPs)
chr7 (9-206)||(23252770-23252965)
chr7 (18-209)||(21944680-21944868)
chr7 (177-209)||(23255547-23255579)
[»] chr5 (4 HSPs)
chr5 (9-209)||(19598759-19598957)
chr5 (208-303)||(16052321-16052413)
chr5 (87-190)||(13951464-13951564)
chr5 (215-254)||(42564264-42564303)
[»] chr4 (3 HSPs)
chr4 (9-205)||(13096238-13096431)
chr4 (9-209)||(17382371-17382568)
chr4 (153-214)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (9-132)||(41543723-41543845)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 53534844 - 53535042
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  53534844 gagagagaaggaaccatatgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 53534943  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53534944 aaaacacatatttaattttaacaaagttcacaaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacttacattgtgggacggagggag 53535040  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 53533654 - 53533686
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||||    
T  53533654 caaagcgacttacattgtgggacggagggagta 53533686  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 53536951 - 53536983
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    ||||||||||||| |||||||||||||||||||    
T  53536951 caaagcgacttaccttgtgggacggagggagta 53536983  T

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Target: chr1 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 4753621 - 4753423
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4753621 gagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggatggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 4753522  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  4753521 aaaacacatatttaattttaacaaagttcacaaaagttaaa---tatttcttaatatacgtaaaagtgtcaaagcgacttacattgtgggacggagggag 4753425  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 38202432 - 38202604
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||| |||||||||||    
T  38202432 gagagagaaggaaccgtgtgaattcattgccttggagttggaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagagg 38202531  T
Q  108 -aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagc 182  Q
     |||| |||||| |||||||||||||||||||||||||||||   |||||||||||||| |||||| |||||||||    
T  38202532 aaaaaaacatatctaattttaacaaagttcacaaaagttaaa---tatttcttaatatgtgtaaaagtgtcaaagc 38202604  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 4756677 - 4756709
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||||    
T  4756677 caaagcgacttacattgtgggacggagggagta 4756709  T

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Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 42916081 - 42915883
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  42916081 gagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 42915982  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42915981 aaaacacatatttaattttaacaaagttcataaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacttacattgtgggacggagggag 42915885  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 42919146 - 42919178
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||| ||||||||||||||||||||    
T  42919146 caaagcgacttatattgtgggacggagggagta 42919178  T

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Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 23252965 - 23252770
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  23252965 gagagagaaggaatcatatgaattcattgccttggagttggaggaatgtgggacggtggcaattaagttggagtaattgtgttgccaagggtaaaagagg 23252866  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggaggga 206  Q
    |||||||||||||||||||||||||||||| ||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23252865 aaaacacatatttaattttaacaaagttcataaaagttaaa---tatttcttaatatgcgaaaaaatgtcaaagcgacttacattgtgggacggaggga 23252770  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 21944868 - 21944680
Alignment:
Q  18 gaaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagaggaaaacacata 117  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||||||||||||| | ||||||||||||| |||||    
T  21944868 gaaccgtgtgaattcattgccttggagttggaggaatttgggacggtgacaatcaagttggagtaattgtgttgccaaggataaaagaggaaaaaacata 21944769  T
Q  118 tttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||| || |||||| || |||| | ||| ||||| ||||||    
T  21944768 tttaattttaacaaagttcacaaaagttaaa---gatttcttaatatgcgtaaaagtgccaaagcaacgtacaatttggaacggaaggagta 21944680  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 23255547 - 23255579
Alignment:
Q  177 caaagcgacttacattgtgggacggagggagta 209  Q
    |||||||||||||||||||||||||||||||||    
T  23255547 caaagcgacttacattgtgggacggagggagta 23255579  T

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Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 19598957 - 19598759
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||| ||||||| |||||  |||||||| |||||||||||||||||||||||| |||||||||||    
T  19598957 gagagagaaggaaccgtgtgaattcattgccttggagtttgaggaatttgggacggtggcaatcaagttggagtaattgtgttgccaagggtaaaagagg 19598858  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||| || || ||||||| | || | | ||||||||||||||    
T  19598857 aaaaaacatatttaattttaacaaagttcacaaaagttaaa---gatttcttaatatgcgtagaagtgccaaagcggcatataatttgggacggagggag 19598761  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 16052321 - 16052413
Alignment:
Q  208 tagtataagctaatacaagcaataagtgggtgattactgcataattgaggcaaaaaggaaatactactacaaactttactctaattaattcttatc 303  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||    
T  16052321 tagtataagctaatacaagcaataagtggttgattactgcataattgaggcaaaaaggaaa---tactacaaattttactctaattaattcttatc 16052413  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 13951564 - 13951464
Alignment:
Q  87 tgttgccaaaggtaaaagaggaaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgact 186  Q
    ||||| ||| ||||||||||| ||| | ||||||| |||| |||||||| |||||||||| |    |||||||||||| ||||||| ||||||||||||     
T  13951564 tgttgtcaagggtaaaagagggaaaaatatatttacttttgacaaagtttacaaaagttaga---gatttcttaatatacgtaaaagtgtcaaagcgaca 13951468  T
Q  187 taca 190  Q
    ||||    
T  13951467 taca 13951464  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 42564264 - 42564303
Alignment:
Q  215 agctaatacaagcaataagtgggtgattactgcataattg 254  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  42564264 agctaatacaagcaataaattggtgattactgcataattg 42564303  T

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Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 13096238 - 13096431
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| |||||||||| | |||| ||||||||||||| ||| |  |||||||| ||||||| |||||||||||||||| |||||||||||    
T  13096238 gagagagaaggaaccgtgtgaattcaattccttagagttggaggaatttgg-acggtggcaatcaagttggggtaattgtgttgccaagggtaaaagagg 13096336  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggaggg 205  Q
    |||| ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||| |||| | ||||||||||||    
T  13096337 aaaaaacatatttaattttaacaaagttcacaaaagttaaa---tatttcttaatatgcgtaaaagtgtcaaagcgacatacaatttgggacggaggg 13096431  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 17382371 - 17382568
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||  |||||||| |||||||| ||||||||||||||| |||||||||||    
T  17382371 gagagagaaggaaccgtgtgaattcattgccttggagttggaggaatttgggacggtggcaatcaagttggaataattgtgttgccaagggtaaaagagg 17382470  T
Q  108 aaaacacatatttaattttaacaaagttcacaaaagttaaatactatttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggag 207  Q
    |||| |||||| |||||||||||||||||||||||||||||    ||||||||||||| |||||| || ||||||||| |||| | ||| ||||||||||    
T  17382471 aaaa-acatatctaattttaacaaagttcacaaaagttaaa---gatttcttaatatgtgtaaaagtgccaaagcgacgtacaatttggaacggagggag 17382566  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 25063663 - 25063602
Alignment:
Q  153 atttcttaatatgcgtaaaaatgtcaaagcgacttacattgtgggacggagggagtagtata 214  Q
    ||||||||||||| || ||| || |||| || |||||| | |||||||||||||||||||||    
T  25063663 atttcttaatatgtgtgaaattgccaaaacgtcttacaatttgggacggagggagtagtata 25063602  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 41543845 - 41543723
Alignment:
Q  9 gagagagaag-aaccatgtgaattcattgccttggagttggaggaatgtgggattgtggcaattaagttggagtaattgtgttgccaaaggtaaaagagg 107  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||| |||||  ||| |||| |||||||||||||||||||||||| |||||||||||    
T  41543845 gagagagaaggaaccgtgtgaattcattgccttggagttggaggaatttgggacggtg-caatcaagttggagtaattgtgttgccaagggtaaaagagg 41543747  T
Q  108 aaaacacatatttaattttaacaaa 132  Q
    |||| |||||||||||||| |||||    
T  41543746 aaaa-acatatttaattttcacaaa 41543723  T

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