View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_16 (Length: 306)
Name: NF15764_low_16
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 2096152 - 2095860
Alignment:
| Q |
1 |
ctctatgatttttcaactccgagtctagctctaatgtgtttgttaagagtccacagcagtagtagtagtataaatagtaaaactgatcggtttgttataa |
100 |
Q |
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| T |
2096152 |
ctctatgatttttcaactccaagtctagctctaatgtgtttgtta-gagtccgcagtagtagtagtagtataaatagtaaaactgatcggtttgttataa |
2096054 |
T |
|
| Q |
101 |
caaattctgaaaccggatttcaaattttttattaaccagagtaaattctttactctgagtgagagtacaaacgctgtaaatggtaaggtaaaatctaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
2096053 |
caaattctgaaaccggatttcaaattttttattaaccagagtaaattctttactctgagt--gagtacaaacgctgtaaatggtaaggttaaatctaacc |
2095956 |
T |
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| Q |
201 |
agggtaactctggtgtgtactatggtggtnnnnnnntgaaccacggtaactgcaatgagtatggctagtaataatggttacactgtcaatcctatg |
296 |
Q |
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| T |
2095955 |
agggtaactctggtgtgtactatggtggtaaaaaaatgaaccacggtaactgcaatgagtatggctagtaataatggttacactgtcaatcctatg |
2095860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2104967 - 2104821
Alignment:
| Q |
1 |
ctctatgatttttcaactccgagtctagctctaatgtgtttgttaagagtccacagcagtagtagtagtataaatagtaaaactgatcggtttgttataa |
100 |
Q |
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|||||||||||||||||||| | || || |||||||||||||||| |||||||||| | || || |||| |||||||| ||||||||||||||||| |
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| T |
2104967 |
ctctatgatttttcaactccaattccaggtctaatgtgtttgtta-gagtccacagtacta----tactata--tagtaaaattgatcggtttgttataa |
2104875 |
T |
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| Q |
101 |
caaattctgaaaccggatttcaaattttttattaaccagagtaaattctttact |
154 |
Q |
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| T |
2104874 |
caaattctgaaaccggatttcaaattttttattaaccagaataaattctttact |
2104821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 2052826 - 2052762
Alignment:
| Q |
79 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagagta |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
2052826 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccagagta |
2052762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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