View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15764_low_20 (Length: 291)
Name: NF15764_low_20
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35288495 - 35288732
Alignment:
| Q |
1 |
atatagttagttagtgaaccttgtttcatctcattcattgatagagttttttgctctttgttgttatttgtcattttaggtgaatatgctacgagagagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35288495 |
atatagttagttagtgaaccttgtttcatctcattcattgatagagtcttttgctctttgttgttatttgtcattttaggtgaatatgctacgagagagg |
35288594 |
T |
|
| Q |
101 |
aacacgagttatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgactatcaaactgttagtcccttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35288595 |
aacacgagttatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgactatcaaactgttagtcccttct |
35288694 |
T |
|
| Q |
201 |
ctatggcctcgaagctgatttatttatttttggtttca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35288695 |
ctatggcctcgaagctgatttatttatttttgctttca |
35288732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University