View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15764_low_21 (Length: 290)

Name: NF15764_low_21
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15764_low_21
NF15764_low_21
[»] chr7 (24 HSPs)
chr7 (14-270)||(18873164-18873420)
chr7 (14-265)||(15167979-15168230)
chr7 (14-261)||(10895795-10896042)
chr7 (14-269)||(14422789-14423043)
chr7 (14-276)||(12709833-12710095)
chr7 (14-276)||(13122904-13123166)
chr7 (14-265)||(16009382-16009631)
chr7 (26-276)||(13743526-13743774)
chr7 (57-276)||(12590633-12590850)
chr7 (57-276)||(13007281-13007497)
chr7 (69-263)||(16677152-16677348)
chr7 (69-263)||(17651388-17651584)
chr7 (210-276)||(21230949-21231015)
chr7 (210-265)||(11382871-11382926)
chr7 (210-265)||(11389348-11389403)
chr7 (210-276)||(20311039-20311107)
chr7 (202-265)||(13679485-13679548)
chr7 (211-266)||(2971254-2971309)
chr7 (211-266)||(20906461-20906516)
chr7 (211-265)||(11311059-11311113)
chr7 (230-271)||(831628-831669)
chr7 (230-271)||(1196808-1196849)
chr7 (230-271)||(34958578-34958619)
chr7 (209-265)||(46625961-46626017)
[»] chr5 (12 HSPs)
chr5 (14-270)||(22750945-22751201)
chr5 (14-277)||(38144525-38144786)
chr5 (14-265)||(28370055-28370304)
chr5 (14-265)||(19512191-19512441)
chr5 (57-270)||(23528479-23528690)
chr5 (201-265)||(18407944-18408008)
chr5 (210-276)||(22438736-22438803)
chr5 (201-265)||(23111200-23111264)
chr5 (211-266)||(19236900-19236955)
chr5 (210-277)||(42961566-42961633)
chr5 (213-266)||(22461158-22461211)
chr5 (213-266)||(22467782-22467835)
[»] chr3 (18 HSPs)
chr3 (14-265)||(14762758-14763009)
chr3 (16-263)||(38310802-38311049)
chr3 (33-263)||(20247791-20248021)
chr3 (26-263)||(24192771-24193009)
chr3 (14-265)||(9534133-9534382)
chr3 (14-266)||(23370505-23370756)
chr3 (14-263)||(55499104-55499353)
chr3 (14-266)||(24933828-24934077)
chr3 (97-276)||(16801457-16801635)
chr3 (57-276)||(41455087-41455304)
chr3 (204-265)||(18929239-18929300)
chr3 (201-265)||(17240513-17240577)
chr3 (211-266)||(13302240-13302295)
chr3 (211-266)||(13323787-13323842)
chr3 (211-266)||(12033444-12033499)
chr3 (211-266)||(13312896-13312951)
chr3 (211-266)||(17131732-17131787)
chr3 (211-266)||(51301589-51301644)
[»] scaffold0026 (2 HSPs)
scaffold0026 (14-276)||(11840-12102)
scaffold0026 (14-266)||(111491-111741)
[»] chr6 (23 HSPs)
chr6 (32-265)||(23057760-23057993)
chr6 (14-276)||(29614136-29614398)
chr6 (14-265)||(23839003-23839253)
chr6 (14-276)||(10986170-10986431)
chr6 (14-276)||(18800242-18800503)
chr6 (30-265)||(4477678-4477912)
chr6 (14-263)||(21565214-21565462)
chr6 (131-276)||(930085-930229)
chr6 (57-276)||(12168212-12168428)
chr6 (57-276)||(19287121-19287337)
chr6 (57-276)||(19785859-19786075)
chr6 (57-276)||(19878305-19878521)
chr6 (57-276)||(19884081-19884297)
chr6 (77-266)||(34639986-34640173)
chr6 (77-266)||(34646660-34646847)
chr6 (152-266)||(25469704-25469816)
chr6 (210-276)||(24512833-24512899)
chr6 (209-265)||(25397172-25397228)
chr6 (213-265)||(9187498-9187550)
chr6 (209-265)||(19471335-19471391)
chr6 (209-265)||(25348486-25348542)
chr6 (209-263)||(25598643-25598697)
chr6 (182-266)||(31252394-31252478)
[»] scaffold1773 (1 HSPs)
scaffold1773 (14-273)||(983-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (14-273)||(49984-50241)
[»] chr4 (12 HSPs)
chr4 (14-276)||(8045822-8046083)
chr4 (11-276)||(11847908-11848179)
chr4 (77-266)||(53483573-53483760)
chr4 (210-276)||(15408139-15408205)
chr4 (209-265)||(8834895-8834951)
chr4 (209-265)||(13888641-13888697)
chr4 (76-266)||(27906130-27906321)
chr4 (211-263)||(14486661-14486713)
chr4 (209-265)||(15245215-15245271)
chr4 (209-260)||(22724691-22724742)
chr4 (230-271)||(15747551-15747592)
chr4 (209-265)||(15308120-15308176)
[»] scaffold0029 (1 HSPs)
scaffold0029 (57-276)||(111728-111948)
[»] scaffold0924 (1 HSPs)
scaffold0924 (14-276)||(740-1002)
[»] chr2 (15 HSPs)
chr2 (14-265)||(19661454-19661703)
chr2 (14-265)||(6483523-6483772)
chr2 (14-265)||(6486990-6487239)
chr2 (69-276)||(26583687-26583892)
chr2 (14-263)||(23089057-23089305)
chr2 (14-263)||(23878813-23879060)
chr2 (14-265)||(23101463-23101713)
chr2 (12-266)||(5706023-5706274)
chr2 (201-265)||(23265133-23265197)
chr2 (201-265)||(23280201-23280265)
chr2 (204-265)||(21908353-21908414)
chr2 (209-265)||(24661576-24661632)
chr2 (211-266)||(10577-10632)
chr2 (211-266)||(25180929-25180984)
chr2 (211-275)||(26885183-26885246)
[»] scaffold0025 (1 HSPs)
scaffold0025 (26-263)||(14398-14635)
[»] chr8 (15 HSPs)
chr8 (14-263)||(8727735-8727984)
chr8 (14-276)||(23866418-23866680)
chr8 (14-266)||(44477428-44477678)
chr8 (14-266)||(44492586-44492836)
chr8 (14-174)||(27940946-27941104)
chr8 (57-276)||(17054440-17054656)
chr8 (201-265)||(23482053-23482117)
chr8 (156-265)||(18614217-18614327)
chr8 (210-276)||(14056553-14056619)
chr8 (209-265)||(39364919-39364975)
chr8 (210-276)||(25111976-25112042)
chr8 (211-265)||(29643386-29643440)
chr8 (211-266)||(24320670-24320725)
chr8 (210-277)||(27940840-27940907)
chr8 (209-265)||(21931696-21931752)
[»] chr1 (12 HSPs)
chr1 (14-265)||(20437024-20437274)
chr1 (57-276)||(41111884-41112100)
chr1 (201-265)||(32651563-32651627)
chr1 (210-265)||(19663517-19663572)
chr1 (201-265)||(18712790-18712854)
chr1 (209-265)||(20805320-20805376)
chr1 (210-265)||(11158093-11158148)
chr1 (209-263)||(10811785-10811839)
chr1 (211-266)||(20851132-20851187)
chr1 (211-266)||(20857759-20857814)
chr1 (211-266)||(21706276-21706331)
chr1 (211-266)||(21710818-21710873)
[»] scaffold0247 (1 HSPs)
scaffold0247 (14-276)||(11146-11407)
[»] scaffold0553 (1 HSPs)
scaffold0553 (14-266)||(10195-10446)
[»] scaffold0544 (1 HSPs)
scaffold0544 (14-266)||(1525-1776)
[»] scaffold0117 (2 HSPs)
scaffold0117 (14-276)||(1887-2148)
scaffold0117 (14-276)||(8564-8825)
[»] scaffold0058 (1 HSPs)
scaffold0058 (26-276)||(109-356)
[»] scaffold0090 (1 HSPs)
scaffold0090 (14-277)||(17973-18236)
[»] scaffold0476 (1 HSPs)
scaffold0476 (14-263)||(3295-3544)
[»] scaffold0154 (1 HSPs)
scaffold0154 (69-276)||(30715-30923)
[»] scaffold0077 (1 HSPs)
scaffold0077 (14-263)||(3624-3872)
[»] scaffold0796 (2 HSPs)
scaffold0796 (75-271)||(1727-1920)
scaffold0796 (75-271)||(5750-5943)
[»] scaffold0634 (1 HSPs)
scaffold0634 (14-106)||(3466-3558)
[»] scaffold0456 (4 HSPs)
scaffold0456 (183-270)||(904-991)
scaffold0456 (183-270)||(8049-8136)
scaffold0456 (26-122)||(806-901)
scaffold0456 (26-122)||(7951-8046)
[»] scaffold0129 (1 HSPs)
scaffold0129 (154-272)||(45268-45386)
[»] scaffold0107 (1 HSPs)
scaffold0107 (210-276)||(40521-40587)
[»] scaffold0222 (1 HSPs)
scaffold0222 (201-265)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (201-265)||(116887-116951)
[»] scaffold0310 (1 HSPs)
scaffold0310 (210-276)||(17643-17710)
[»] scaffold0124 (1 HSPs)
scaffold0124 (210-265)||(34276-34331)
[»] scaffold0019 (1 HSPs)
scaffold0019 (210-276)||(135473-135539)
[»] scaffold0461 (1 HSPs)
scaffold0461 (201-265)||(8-72)
[»] scaffold0235 (1 HSPs)
scaffold0235 (212-276)||(22582-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (201-265)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (201-265)||(101928-101992)
[»] scaffold0815 (1 HSPs)
scaffold0815 (214-276)||(1453-1515)
[»] scaffold0138 (1 HSPs)
scaffold0138 (209-265)||(12296-12352)
[»] scaffold2054 (1 HSPs)
scaffold2054 (213-276)||(717-780)
[»] scaffold0790 (1 HSPs)
scaffold0790 (244-279)||(5487-5522)
[»] scaffold0317 (1 HSPs)
scaffold0317 (202-265)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (210-265)||(14997-15052)
[»] scaffold0261 (1 HSPs)
scaffold0261 (76-276)||(23559-23760)
[»] scaffold0609 (1 HSPs)
scaffold0609 (182-266)||(5857-5941)
[»] scaffold0096 (1 HSPs)
scaffold0096 (209-269)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (211-275)||(493019-493082)
[»] scaffold0348 (1 HSPs)
scaffold0348 (211-266)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (211-266)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (211-266)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (211-265)||(1913-1967)
[»] scaffold0335 (1 HSPs)
scaffold0335 (209-265)||(2628-2684)
[»] scaffold0034 (1 HSPs)
scaffold0034 (76-263)||(73149-73337)
[»] scaffold0003 (2 HSPs)
scaffold0003 (251-279)||(80293-80321)
scaffold0003 (251-279)||(100015-100043)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 18873164 - 18873420
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  18873164 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 18873263  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18873264 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 18873363  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 270  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18873364 tttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 15167979 - 15168230
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  15167979 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 15168078  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15168079 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 15168178  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168179 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 10896042 - 10895795
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  10896042 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 10895943  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactaagcaattaggtcaa 212  Q
    ||||||| |||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  10895942 attacaagagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 10895844  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttac 261  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||    
T  10895843 ttttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 14422789 - 14423043
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||     
T  14422789 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattac 14422887  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  14422888 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 14422986  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 269  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14422987 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 12710095 - 12709833
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacatta 112  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| |||||||||||||||| |||||||||||  |||||||||||||    
T  12710095 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaaca-agattaagtttatattctgaacatta 12709997  T
Q  113 tattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtca 211  Q
    ||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  12709996 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtca 12709897  T
Q  212 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    | |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12709896 a-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 13123166 - 13122904
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacatta 112  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| |||||||||||||||| |||||||||||  |||||||||||||    
T  13123166 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaaca-agattaagtttatattctgaacatta 13123068  T
Q  113 tattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtca 211  Q
    ||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  13123067 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtca 13122968  T
Q  212 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    | |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13122967 a-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 16009382 - 16009631
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||  |||||||||||||||||||| |||||||     
T  16009382 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcagtttatgatcacaacaacagtatagattaagttttcattctaaacattac 16009480  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||    
T  16009481 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaat 16009579  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16009580 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 276
Target Start/End: Original strand, 13743526 - 13743774
Alignment:
Q  26 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaa 125  Q
    ||||||||||| |||||| |   ||||||| |||| ||||||||||||||||||| |||||||||||||| |||| ||||||||  ||| ||||| | ||    
T  13743526 attcatcaatttatccaaccaagcataatt-tcaaccaatttatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaa 13743624  T
Q  126 ttaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaatta 225  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||    
T  13743625 ttaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaatta 13743723  T
Q  226 tagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13743724 taaattatgattattgagagatagtctcacccttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 57 - 276
Target Start/End: Complemental strand, 12590850 - 12590633
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| ||||||||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  12590850 tcaatcaattaatggattacagcaacaacatggattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcatt--ccatcag 12590753  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  12590752 aatcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 12590654  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  12590653 ccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 13007281 - 13007497
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  13007281 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 13007377  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  13007378 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 13007476  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  13007477 ccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 263
Target Start/End: Original strand, 16677152 - 16677348
Alignment:
Q  69 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 168  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||| |  | | | ||| |||||||||||||    
T  16677152 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 16677251  T
Q  169 ccctaaccctcaattt-atcttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    |||||||||| ||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  16677252 ccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 263
Target Start/End: Original strand, 17651388 - 17651584
Alignment:
Q  69 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 168  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||| |  | | | ||| |||||||||||||    
T  17651388 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 17651487  T
Q  169 ccctaaccctcaattt-atcttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    |||||||||| ||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  17651488 ccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 21231015 - 21230949
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 21230949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 20311107 - 20311039
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag--ttttgcagaa 276  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaa 20311039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  202 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||| ||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  230 ttatgattatcgagagatagtctcacccttaccttagttttg 271  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  230 ttatgattatcgagagatagtctcacccttaccttagttttg 271  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  230 ttatgattatcgagagatagtctcacccttaccttagttttg 271  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||| ||||||||| ||||| || || ||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 22750945 - 22751201
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  22750945 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 22751044  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22751045 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 22751144  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 270  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22751145 tttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 38144786 - 38144525
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  || ||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  38144786 catcatacaaatcttcatcaattcatccaatcaatcgtaatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 38144688  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  38144687 attacaatagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaat 38144589  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 277  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38144588 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 38144525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 28370304 - 28370055
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  28370304 catcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 28370206  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  28370205 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 28370107  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28370106 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 19512191 - 19512441
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  19512191 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 19512289  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaa 212  Q
     |||||| |||||||||||||| | |||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  19512290 gttacaatagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 19512388  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19512389 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 23528479 - 23528690
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  23528479 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaaactaacatcatccttactcatt--ccatcag 23528576  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  23528577 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 23528675  T
Q  256 ccttaccttagtttt 270  Q
    |||||||||||||||    
T  23528676 ccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 22438803 - 22438736
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaa 276  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaa 22438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 42961566 - 42961633
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 277  Q
    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 42961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 14763009 - 14762758
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  14763009 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 14762910  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14762909 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 14762810  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762809 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 38311049 - 38310802
Alignment:
Q  16 tcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatat 115  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  38311049 tcatacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatat 38310950  T
Q  116 tacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattt 215  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  38310949 tacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatat 38310850  T
Q  216 tcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310849 tcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 263
Target Start/End: Complemental strand, 20248021 - 20247791
Alignment:
Q  33 aattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacat 132  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||    
T  20248021 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacat 20247922  T
Q  133 gattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagatta 232  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20247921 gatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagatta 20247822  T
Q  233 tgattatcgagagatagtctcacccttacct 263  Q
    ||||||| |||||||||||||||||||||||    
T  20247821 tgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 263
Target Start/End: Original strand, 24192771 - 24193009
Alignment:
Q  26 attcatcaattcatccaatcgctcataattctcaatcaatttatgat-cacagcaacaacatagattaagttttcattctgaacattatattacaacaga 124  Q
    ||||||||||| ||||||||  ||||| || ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||    
T  24192771 attcatcaatttatccaatcaatcatattt-tcaatcagtttatgattcacagcaacagcatagattaagttttcattctgaacatcacattacaacaga 24192869  T
Q  125 attaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactaagcaattaggtcaattttcagaaat 223  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  24192870 attaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaat 24192969  T
Q  224 tatagattatgattatcgagagatagtctcacccttacct 263  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  24192970 tatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 9534133 - 9534382
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||  |||||  |||||||||||||||||||| |||||||     
T  9534133 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacgacaacagtatagattaagttttcattctaaacattac 9534231  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    |||||||||||||||||||||| | |||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  9534232 attacaacagaattaacatgatcaatacccattccact-cagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 9534330  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9534331 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 23370756 - 23370505
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  23370756 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 23370658  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  23370657 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 23370559  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  23370558 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 55499353 - 55499104
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || || ||||||||||||||||  | ||| || |||||||||||||||||||||||||   |||||||||| |||||||| |||||| |     
T  55499353 catcatacaaaacttgatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaactgtatagattaagatttcattccgaacatcac 55499255  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactaagcaattaggtcaa 212  Q
    ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||| | |||   |||||| |||||||||    
T  55499254 attacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcagttaggtcaa 55499157  T
Q  213 tttt-cagaaattatagattat-gattatcgagagatagtctcacccttacct 263  Q
    |||| | ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  55499156 ttttcccgaaattacatattatctattaatgagagatagtctcacccttacct 55499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 24934077 - 24933828
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacatta 112  Q
    ||||||||| | |||||||||||||| ||||   ||| || | |||||||||| ||| ||  |||||||||||| ||||||| ||||||||| |||||||    
T  24934077 catcatacaaatattcatcaattcatacaatacatcaaaaat-tcaatcaattaatggattgcagcaacaacatggattaagctttcattcttaacatta 24933979  T
Q  113 tattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaa 212  Q
     ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||   |||  |||| |||||||||||  ||||||||||||    
T  24933978 aattccgagaaaactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaa 24933881  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24933880 ttt-cagaaattatagattatgattattgagagatagtctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 16801635 - 16801457
Alignment:
Q  97 ttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaa 195  Q
    |||||||| ||||| | |||||| || | |||||||||| ||||| |  ||| | ||| |||||||||||| |||||||| ||||||| |||||| |||     
T  16801635 ttcattctaaacatcacattacagcatatttaacatgatcattacaccattctcctcaaaatcatcatcaa-ccctaaccttcaattttatcttcaaaag 16801537  T
Q  196 ctaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  16801536 ctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttgcagaa 16801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 276
Target Start/End: Complemental strand, 41455304 - 41455087
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || |||||||| | || ||||||| |||||||||  |||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  41455304 tcaatcaattcatggattacagcaaccatatggattaagatttcattcttgacattaaatttcaagaaaactaacatcatctttactcatt--ccatcag 41455207  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    |||||||||||| ||||||   |||   ||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  41455206 aatcatcatcaatccctaattttcatcctattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41455108  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  41455107 ccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  204 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    |||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 12102 - 11840
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  12102 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaacaacaaagattaagttttcattctgaagattat 12003  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  12002 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaat 11903  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11902 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 111491 - 111741
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  111491 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 111589  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  111590 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 111688  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  111689 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 23057760 - 23057993
Alignment:
Q  32 caattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaaca 131  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaaca 23057859  T
Q  132 tgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagatt 231  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  23057860 tgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagatt 23057959  T
Q  232 atgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||||||||||||||||||    
T  23057960 atgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 29614398 - 29614136
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||||||||||||||||||||||||||  |||||| | |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||      
T  29614398 catcatacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaacaacaaagattaagttttcattctaaacattca 29614299  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatctt-ccaaaactaagcaattaggtcaa 212  Q
    || |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| || |||| ||||||||    
T  29614298 at-acaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaa 29614200  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29614199 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 29614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 23839003 - 23839253
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  23839003 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 23839101  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaa-actaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  23839102 attacaacagaattaacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaa 23839200  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23839201 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 10986431 - 10986170
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  || ||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  10986431 catcatacaaatcttcatcaattcatccaatcaatcgtaatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 10986333  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  10986332 attacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 10986234  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||| |||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||    
T  10986233 tttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 18800242 - 18800503
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||  || |||||||||||||||||||  | ||| || ||||||||||| |||||||| |||||| |||||||||| ||||||| ||||||| |     
T  18800242 catcataccaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacaacaacaatatagattaagatttcattttgaacatcac 18800340  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatt-tatcttccaaaactaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  18800341 attacaacagaattaacatgatcattactcatt-ccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaa 18800439  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  18800440 ttttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcagaa 18800503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 265
Target Start/End: Original strand, 4477678 - 4477912
Alignment:
Q  30 atcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaa 129  Q
    ||||| ||||||||||  |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||     
T  4477678 atcaaatcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattag 4477776  T
Q  130 catgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaattttcagaaattatag 228  Q
    |||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  4477777 catgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatag 4477875  T
Q  229 attatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||| |||||||||||||||||||||||||    
T  4477876 attatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 21565462 - 21565214
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||||||||||||||||||  |||||||||| |||||||| |||| | |     
T  21565462 catcatacagaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcac 21565364  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactaagcaattaggtcaa 212  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||| | |||   ||||||||||||||||    
T  21565363 attacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 21565266  T
Q  213 ttttcagaaattatagattat-gattatcgagagatagtctcacccttacct 263  Q
    ||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  21565265 ttttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 131 - 276
Target Start/End: Complemental strand, 930229 - 930085
Alignment:
Q  131 atgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagat 230  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||| |||||||    
T  930229 atgatcattacccatt-cccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagat 930131  T
Q  231 tatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  930130 tatgattattgagagatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 12168212 - 12168428
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  12168212 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 12168308  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  12168309 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 12168407  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  12168408 ccttaccttagttttgcagaa 12168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 19287121 - 19287337
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19287121 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19287217  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19287218 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19287316  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  19287317 ccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 57 - 276
Target Start/End: Complemental strand, 19786075 - 19785859
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19786075 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19785979  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  ||| ||||| |||||||||||  ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19785978 aatcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19785880  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  19785879 ccttaccttagttttgcagaa 19785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 19878305 - 19878521
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19878305 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19878401  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19878402 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19878500  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  19878501 ccttaccttagttttgcagaa 19878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 19884081 - 19884297
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  19884081 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 19884177  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  19884178 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 19884276  T
Q  256 ccttaccttagttttgcagaa 276  Q
    ||| |||||||||||||||||    
T  19884277 cctaaccttagttttgcagaa 19884297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 266
Target Start/End: Complemental strand, 34640173 - 34639986
Alignment:
Q  77 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 176  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||| ||||||||||||||||      
T  34640173 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaaccatcatcaaaccctaatt 34640076  T
Q  177 ctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
     ||   |||| |||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34640075 ttcttattattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 266
Target Start/End: Complemental strand, 34646847 - 34646660
Alignment:
Q  77 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 176  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||| ||||||||||||||||      
T  34646847 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaaccatcatcaaaccctaatt 34646750  T
Q  177 ctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
     ||   |||| |||||||| ||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34646749 ttcttattattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 25469816 - 25469704
Alignment:
Q  152 tcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtc 251  Q
    ||||||| |||||||||||||||   |||  |||| ||||||||| |  ||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  25469816 tcagaattatcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtc 25469719  T
Q  252 tcacccttaccttag 266  Q
    |||||||||||||||    
T  25469718 tcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 24512899 - 24512833
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaa 24512833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    |||||||||||||| |||| |||||||| || ||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 31252394 - 31252478
Alignment:
Q  182 tttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||| | |||||  ||||||| | ||||||||||||||||| ||||| || ||  | ||||| |||||||||||||||||    
T  31252394 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 983 - 1240
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  983 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-agattaagttttcattctgaacattat 1081  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||     
T  1082 attacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa- 1180  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgca 273  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1181 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 49984 - 50241
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49984 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-agattaagttttcattctgaacattat 50082  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||     
T  50083 attacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa- 50181  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgca 273  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50182 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 8046083 - 8045822
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  8046083 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggattaagttttcattctgaacattat 8045984  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||||| |||||||||||||     
T  8045983 attacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa- 8045885  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8045884 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 11847908 - 11848179
Alignment:
Q  11 catcatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacat 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11847908 catcatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacat 11848007  T
Q  111 tatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa------tttatcttccaaaactaagcaat 204  Q
    ||||||| || || ||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||      || || || |||||||| || |     
T  11848008 tatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccac 11848107  T
Q  205 taggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11848108 taggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 53483573 - 53483760
Alignment:
Q  77 gcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaacc 176  Q
    |||||||||| ||||||||||||||||| ||| ||| |||   | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||      
T  53483573 gcaacaacatggattaagttttcattcttaacgttaaattcagagaaaactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaatt 53483670  T
Q  177 ctcaatttatcttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
     |||  |||| || ||||| |||  ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  53483671 ttcatattatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 15408139 - 15408205
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| | |||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaa 15408205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 266
Target Start/End: Original strand, 27906130 - 27906321
Alignment:
Q  76 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 175  Q
    |||||||  ||||||||||   |||| | |||||| | ||||||||| | | ||||||||| |||| | ||| | |||| ||||| ||||| |||||||     
T  27906130 agcaacattatagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaaatcaacatcacaccctaat 27906229  T
Q  176 cctcaattt-atcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
     |||||||| |||||| | |||||  | ||||  | ||||||||||||||||| |||||||| || || ||||| || |||||||| |||||    
T  27906230 tctcaattttatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataatcccacccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    ||||||||||||||||| |||||||| || ||  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 260  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  230 ttatgattatcgagagatagtctcacccttaccttagttttg 271  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 111728 - 111948
Alignment:
Q  57 tcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcaga 156  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  111728 tcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttcaga 111827  T
Q  157 atcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  111828 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcac 111927  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  111928 ccttaccttagttttgcagaa 111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 1002 - 740
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||||||||| |||||||| |||||||||||| || |||||||||||    
T  1002 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaaca-agattaagtttttatcctgaacattat 904  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaa 212  Q
    ||||||| || |||| |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  903 attacaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaa 804  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  803 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 19661703 - 19661454
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||     
T  19661703 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattac 19661605  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
    |||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19661604 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaat 19661506  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19661505 tttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 6483523 - 6483772
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  6483523 catcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 6483621  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  6483622 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 6483720  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6483721 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 6486990 - 6487239
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  ||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  6486990 catcatacaaatcttcatcaattcatcccatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 6487088  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  6487089 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 6487187  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6487188 tttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 69 - 276
Target Start/End: Original strand, 26583687 - 26583892
Alignment:
Q  69 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 168  Q
    ||||||||||||||  |||||||| |  |||||||||||||| |  |||||||| | |||||||||| ||||||| |||||| ||||||||||||||||     
T  26583687 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattaccc-tttcccctcagaatcatcatcaag 26583785  T
Q  169 ccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtt 268  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26583786 ccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagtt 26583884  T
Q  269 ttgcagaa 276  Q
    ||||||||    
T  26583885 ttgcagaa 26583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 23089305 - 23089057
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||||||||||||||||||  |||||||||| |||||||| |||| | |     
T  23089305 catcatacagaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcac 23089207  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactaagcaattaggtcaa 212  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |||||| | |||   ||||||||||||||||    
T  23089206 attacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 23089109  T
Q  213 ttttcagaaattatagattat-gattatcgagagatagtctcacccttacct 263  Q
    ||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  23089108 ttttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 23878813 - 23879060
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||  |  || || |||||||||||||||||||| |||||  |||||||||| ||||||||||||||| |     
T  23878813 catcatacaaaacttcatcaattcatccaatcaattctattt-tcaatcaatttatgatcacaacaacagtatagattaagatttcattctgaacatcac 23878911  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt-atcttccaaaactaagcaattaggtcaa 212  Q
    ||||||||| |||||||||||| |||||||  ||||| |||||||||||| | |||||||||||||||||| ||| | |||   ||||||||||||||||    
T  23878912 attacaacataattaacatgatcattaccccattcccctcagaatcatcaac-aaccctaaccctcaatttaatcct-caaggttaagcaattaggtcaa 23879009  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    ||||  ||||||||| || || ||||  |||||||||||||||||||||||    
T  23879010 tttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 23101713 - 23101463
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || ||||| |||||||||||||  | ||| || |||||||||||||||||||| |||||  |||||||||| |||||||| |||| | |     
T  23101713 catcatacagaacttcatgaattcatccaatcaattatattt-tcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacgtcac 23101615  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactaagcaattaggtcaa 212  Q
    ||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||| | |||   ||| ||||||||||||    
T  23101614 attacaacataattaacatgatcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaaacaattaggtcaa 23101517  T
Q  213 ttttcagaaattatagattat-gattatcgagagatagtctcacccttacctta 265  Q
    ||||| ||||||| | |||||  ||||  |||||||||||||||||||||||||    
T  23101516 ttttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 5706274 - 5706023
Alignment:
Q  12 atcatcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacat 110  Q
    |||||||| |||| |||||||||||||| ||||   ||| |||| |||||||||| ||| ||   ||||||||||| ||| ||| ||||||||| |||||    
T  5706274 atcatcatccacatattcatcaattcatacaattcatcaaaatt-tcaatcaattaatggattgtagcaacaacatggatcaagctttcattcttaacat 5706176  T
Q  111 tatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggt 209  Q
    || |||   | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||   |||  |||| || ||||| |||  |||||||||    
T  5706175 taaattcagaga-aactaacatcatctttactcatt--ccatcagaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggt 5706079  T
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    |||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  5706078 caattt-caggaattatagattatgattaatgagagatagtctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  204 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 26885183 - 26885246
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 275  Q
    ||||||||||||||||| |||| |||||| || ||||| || ||||||||||||||  |||||||    
T  26885183 aattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 26 - 263
Target Start/End: Complemental strand, 14635 - 14398
Alignment:
Q  26 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaa 125  Q
    ||||||||||| ||||||||  ||||| || ||||||| |||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||    
T  14635 attcatcaatttatccaatcaatcatattt-tcaatcagtttatgatcacagcaacagcatagattaagttttcattcggaacatcacattacaacagaa 14537  T
Q  126 ttaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactaagcaattaggtcaattttcagaaatt 224  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  14536 ttaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaatt 14437  T
Q  225 atagattatgattatcgagagatagtctcacccttacct 263  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  14436 atagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 8727984 - 8727735
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  8727984 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 8727885  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttcc-aaaactaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| | |||||| | ||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  8727884 attacaacagaattaacatgatcaataccca-tacccctcagaatcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 8727786  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  8727785 ttttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 23866418 - 23866680
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataa-ttctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacatta 112  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  ||||| |||| ||||| |||||||||| |||||||||||  |||||||||||||    
T  23866418 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcagagcaacaaca-agattaagtttatattctgaacatta 23866516  T
Q  113 tattacaac-agaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtca 211  Q
    ||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  23866517 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtca 23866616  T
Q  212 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    | |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23866617 a-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 44477428 - 44477678
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  44477428 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 44477526  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  44477527 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 44477625  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44477626 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 44492586 - 44492836
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  44492586 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 44492684  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaat 213  Q
     ||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  44492685 gttacaacagaattaacatgatcaatacccattcccct-caaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaat 44492783  T
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44492784 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 27941104 - 27940946
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||| | |||||  ||||||||| ||||||||||||||||||     
T  27941104 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcataacaacagtatagattaaattttcattctgaacattac 27941006  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaa 174  Q
    |||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||||||    
T  27941005 attacaacagaattaacatgatcaataccca-ttcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 17054440 - 17054656
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||| ||  |||| ||||  || ||||    
T  17054440 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacatcatctttactcatt--ccatcag 17054536  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| |||||||||||  ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  17054537 aatcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcac 17054635  T
Q  256 ccttaccttagttttgcagaa 276  Q
    ||||||||| |||||||||||    
T  17054636 ccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 18614217 - 18614327
Alignment:
Q  156 aatcatcatcaaaccctaaccctcaattt-atcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 254  Q
    ||||| ||| |||||||||  |||||||| |||||| | ||| |  ||||| | ||||||||||||||||||| || |||||||| ||||||||||||||    
T  18614217 aatcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctca 18614316  T
Q  255 cccttacctta 265  Q
    |||||||||||    
T  18614317 cccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 14056619 - 14056553
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaa 14056553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 25111976 - 25112042
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaa 25112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 27940907 - 27940840
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 277  Q
    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 27940840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 20437274 - 20437024
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||     
T  20437274 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 20437176  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaa 212  Q
    ||||||||| |||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  20437175 attacaacataattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaa 20437077  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20437076 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 57 - 276
Target Start/End: Original strand, 41111884 - 41112100
Alignment:
Q  57 tcaatcaatttatg-atcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcag 155  Q
    |||||||||| ||| || ||||||||||||| ||||||| |||| |||| ||||||| ||| ||| | || |||||   |  |||| ||||  || ||||    
T  41111884 tcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaaga-aactaacaccgtctttactcatt--ccatcag 41111980  T
Q  156 aatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 255  Q
    ||||||||||||||||||||  |||  |||| || ||||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  41111981 aatcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcac 41112079  T
Q  256 ccttaccttagttttgcagaa 276  Q
    |||||||||||||||||||||    
T  41112080 ccttaccttagttttgcagaa 41112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 11146 - 11407
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||| ||||||||||||||  || ||||||| ||||||| ||||||| |     
T  11146 catcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacagcaacagtatggattaagatttcattttgaacatcac 11244  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatt-tatcttccaaaactaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  11245 attacaacagaattaacatgatcattactcatt-ccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaa 11343  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11344 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 10446 - 10195
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  10446 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 10348  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  10347 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 10249  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  10248 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 1776 - 1525
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||  |||||||| |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||     
T  1776 catcatacaaatcttcatcaattcatccaatcaatcataatt-tcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 1678  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaa 212  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  1677 attacaacagaattaacatgatcaatacccattcccct-cagaatcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaa 1579  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1578 ttttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 2148 - 1887
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||| ||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||     
T  2148 catcgtacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattatgaacattaa 2049  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaa- 212  Q
    ||||||| ||||||||||| || ||||||||||  || ||| |||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||     
T  2048 attacaagagaattaacataatcattacccatt--ccatcaaaatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaat 1951  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  1950 ttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 8825 - 8564
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    |||| ||||||||||||||||||||| ||||| || || | | |||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||     
T  8825 catcgtacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattttgaacattaa 8726  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaa- 212  Q
    ||||||| ||||||||||| || ||||||||||  || ||| |||||||||||||||||||||||||| |||| |||||||||||  ||||||||||||     
T  8725 attacaagagaattaacataatcattacccatt--ccatcataatcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaat 8628  T
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8627 ttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 276
Target Start/End: Original strand, 109 - 356
Alignment:
Q  26 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaa 125  Q
    ||||||||||| |||||| |  |||||||| |||| ||||||||||||||| ||| |||||||||||||| |||| ||||||||  ||| ||||| | ||    
T  109 attcatcaatttatccaaccaatcataatt-tcaaccaatttatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaa 207  T
Q  126 ttaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaatta 225  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  208 ttaacatgatcattacccattcccct-cagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaatta 305  T
Q  226 tagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  306 tagattatggttattgagagatagtctcacccttaccttagttttgcagaa 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 17973 - 18236
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| | ||||||||||| ||||||||  ||  |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |     
T  17973 catcatacaaatattcatcaatttatccaatcaatccaaatt-tcaatcaattcatgatcacagcaacaacataggttaagttttcattctggacatcac 18071  T
Q  114 attacaa-cagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtca 211  Q
    ||||||| ||||||||||||||  |||||| ||||||| | ||||||||||| ||||| ||||||||||||||| |||| ||| ||||||||||||||||    
T  18072 attacaaacagaattaacatgaccattacc-atttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtca 18170  T
Q  212 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 277  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18171 attttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 18236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 3544 - 3295
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||  | ||| || ||||||||||| ||||||||||||||  |||||||||| ||||||||||||||| |     
T  3544 catcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttgtgatcacagcaacagtatagattaagatttcattctgaacatcac 3446  T
Q  114 attacaacagaattaacatgatt-attacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactaagcaattaggtca 211  Q
    ||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||  ||||   |||||||||||||||    
T  3445 attacaacaaaattaacatgattcattaccca-ttcccctcagaatcatcatcaaaccctaaccctcaattttatc-cccaaggttaagcaattaggtca 3348  T
Q  212 attttcagaaattatagattat-gattatcgagagatagtctcacccttacct 263  Q
    |||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  3347 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 69 - 276
Target Start/End: Original strand, 30715 - 30923
Alignment:
Q  69 tgatcacagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaa 168  Q
    |||||||| |||||  |||||||| |  ||||||||| |||| |  |||||||| | ||||||||||  |||| |  ||||| ||| |||||||||||||    
T  30715 tgatcacatcaacattatagattaggaattcattctgcacatcactttacaacatatttaacatgatcgttacaccattcccctcaaaatcatcatcaaa 30814  T
Q  169 ccctaaccctcaattt-atcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagt 267  Q
    |||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30815 ccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagt 30914  T
Q  268 tttgcagaa 276  Q
    |||||||||    
T  30915 tttgcagaa 30923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 3872 - 3624
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||  | ||| || |||||||||||||||||||| |||||  |||||||||| |||||||| |||||| |     
T  3872 catcatacaaaacttcatcaattcatccaatcaattatattt-tcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacatcac 3774  T
Q  114 attacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactaagcaattaggtcaa 212  Q
    ||||||||| |||||||||||| |||||||| | ||| |||||||||||||||||||||||||||||| |||||| | |||   ||||||||||||||||    
T  3773 attacaacataattaacatgatcattaccca-tccccctcagaatcatcatcaaaccctaaccctcaattttatcct-caaggttaagcaattaggtcaa 3676  T
Q  213 ttttcagaaattatagattat-gattatcgagagatagtctcacccttacct 263  Q
    ||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  3675 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 75 - 271
Target Start/End: Complemental strand, 1920 - 1727
Alignment:
Q  75 cagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaa 174  Q
    |||||||| ||| ||||||| ||||||||| ||||||| ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||    
T  1920 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcatt--ccatcagaatcatcatcaaaccctaa 1823  T
Q  175 ccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 271  Q
    |  |||  |||| |||||||||||  ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1822 ctttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 75 - 271
Target Start/End: Complemental strand, 5943 - 5750
Alignment:
Q  75 cagcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaa 174  Q
    |||||||| ||| ||||||| ||||||||| ||||||| ||| | | | || |||||| ||  |||| ||||  || |||||||||||||||||||||||    
T  5943 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcatt--ccatcagaatcatcatcaaaccctaa 5846  T
Q  175 ccctcaatttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 271  Q
    |  |||  |||| |||||||||||  ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5845 ctttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 3466 - 3558
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctga 106  Q
    |||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3466 catcatacacaaattcatcaattcatccaatcacccataaatttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 904 - 991
Alignment:
Q  183 ttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 270  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 8049 - 8136
Alignment:
Q  183 ttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 270  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 806 - 901
Alignment:
Q  26 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaaca 122  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  806 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 7951 - 8046
Alignment:
Q  26 attcatcaattcatccaatcgctcataattctcaatcaatttatgatcacagcaacaacatagattaagttttcattctgaacattatattacaaca 122  Q
    ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  7951 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 8046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 45386 - 45268
Alignment:
Q  154 agaatcatcatcaaaccctaaccctcaatttatcttccaaaa-ctaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtct 252  Q
    |||||||||||||||||||||   |||  |||| || ||||| |||  ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtct 45288  T
Q  253 cacccttaccttagttttgc 272  Q
    |||||||||||||| |||||    
T  45287 cacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 40587 - 40521
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 40521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 17643 - 17710
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaa 276  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaa 17710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 135473 - 135539
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaa 135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 22646 - 22582
Alignment:
Q  212 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaa 22582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  201 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  214 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 717 - 780
Alignment:
Q  213 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 276  Q
    ||||||||||||||| |||| ||| || || ||||| || ||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcagaa 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 5487 - 5522
Alignment:
Q  244 agatagtctcacccttaccttagttttgcagaataa 279  Q
    ||||||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaataa 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  202 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  210 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 276
Target Start/End: Complemental strand, 23760 - 23559
Alignment:
Q  76 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 175  Q
    |||||||  ||||||||||   |||| |||||||| | ||||||||| | | ||||||||| ||||   ||| | |||| ||||| ||||| |||||||     
T  23760 agcaacattatagattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaaatcagcatcacaccctaat 23661  T
Q  176 cctcaattta-tcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcag 274  Q
     ||||||||  ||||| | |||||  |  |||| | ||||||||||||||||| |||||||| ||  | ||||| || ||||||||||||||  ||||||    
T  23660 tctcaattttgtcttcaagaactattcttttagattaattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcag 23561  T
Q  275 aa 276  Q
    ||    
T  23560 aa 23559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 5941 - 5857
Alignment:
Q  182 tttatcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||| | |||||  ||||||| | ||||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  5941 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 269  Q
    ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 493082 - 493019
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 275  Q
    ||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||  |||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 266  Q
    ||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  211 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  209 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 265  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 263
Target Start/End: Original strand, 73149 - 73337
Alignment:
Q  76 agcaacaacatagattaagttttcattctgaacattatattacaacagaattaacatgattattacccatttcccttcagaatcatcatcaaaccctaac 175  Q
    |||||||  ||||||||||   |||| | |||||| | ||||||||| | | ||||||||| |||| |  || | |||| ||||| ||||| |||||||     
T  73149 agcaacattatagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccgtttctttcaaaatcaacatcacaccctaat 73248  T
Q  176 cctcaattt-atcttccaaaactaagcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 263  Q
     |||||||| |||||| | | |||  | ||||| | |||||||| |||||||| |||||||| || || ||||| || |||||||||||    
T  73249 tctcaattttatcttcaagagctatcctattagattaattttcataaattatacattatgatcattgaaagataatcccacccttacct 73337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 80321 - 80293
Alignment:
Q  251 ctcacccttaccttagttttgcagaataa 279  Q
    |||||||||||||||||||||||||||||    
T  80321 ctcacccttaccttagttttgcagaataa 80293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 100043 - 100015
Alignment:
Q  251 ctcacccttaccttagttttgcagaataa 279  Q
    |||||||||||||||||||||||||||||    
T  100043 ctcacccttaccttagttttgcagaataa 100015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University