View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_22 (Length: 285)
Name: NF15764_low_22
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 34738819 - 34739103
Alignment:
| Q |
1 |
cctgtaatgaaatacactgtgtgtggaaattcagttcgaactaaacccatggtgtcacgtaaaatatcgaagctgtcaaaatccccaaacaaaaaataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738819 |
cctgtaatgaaatacactgtgtgtggaaattctgttcgaactaaacccatggtgtcacgtaaaatatcgaagctgtcaaaatccccaaacaaaaaataaa |
34738918 |
T |
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| Q |
101 |
tcatgacatgtaagtctcagatatactaaacagaaattaaagcaaacgcaacaaaatttatggcataaattctcctcttgaactctaaagtaccgacact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738919 |
tcatgacatgtaagtctcagatatactaaacagaaattaaagcacacgcaacaaaatttatggcataaattctcctcttgaactctaaagtaccgacact |
34739018 |
T |
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| Q |
201 |
tctgtttgaaagtgtgtttggtgtatgacacttgttagtgtactacgctaacacaagtgactacattgaattatgtcattttctc |
285 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34739019 |
tctgattgaaagtgtgtttggtgtgtgacacttgttagtgtactatgctaacacaagtgactacattgaattatgtcattttctc |
34739103 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 9648484 - 9648381
Alignment:
| Q |
7 |
atgaaatacactgtgtgtggaaattcagttcgaactaaacccatggtgtcacgtaaaatatcgaagctgtcaaaatccccaaacaaaaaataaatcatga |
106 |
Q |
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||||||||||| |||||||||||||| |||||||||| ||| |||||| | || |||||| ||||||||||||| | ||||| ||| | || |||||| |
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| T |
9648484 |
atgaaatacaccgtgtgtggaaattcttttcgaactaagcccgaggtgtctcttacaatatcaaagctgtcaaaatacacaaacgaaacagaattcatga |
9648385 |
T |
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| Q |
107 |
catg |
110 |
Q |
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|||| |
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| T |
9648384 |
catg |
9648381 |
T |
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