View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_23 (Length: 257)
Name: NF15764_low_23
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 35905088 - 35905337
Alignment:
| Q |
1 |
gcaccactgcccatagtactcttccctgatcctgttgatttcgttccggttgtgtgagaatttccatagagaggcaaccaacttgatgtggtgtttgtgt |
100 |
Q |
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| T |
35905088 |
gcaccactgcccatagtactcttccctgatcctgttgatttcgttccggttgtgtgagaatttccatagagaggcaaccaacttgatgtggtgtttgtgt |
35905187 |
T |
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| Q |
101 |
atgaacctggtatcagatataaaattagttaattacactagttagttgttattctcattggctatataaatcttatatactcttttagcgtaattgacgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35905188 |
atgaacctggtatcagatataaaattagttaattacactagttagttgttattctcattggctatataaatcttatatactcttttagcgtaattcacgt |
35905287 |
T |
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| Q |
201 |
ttcatattctctcgttatgaatataattttcattttactttttcttatca |
250 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35905288 |
ttcatattctctcgttatcaatataattttcattttactttttcttatca |
35905337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 13868847 - 13868806
Alignment:
| Q |
125 |
ttagttaattacactagttagttgttattctcattggctata |
166 |
Q |
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||||||| ||||| |||||||| ||||||||||||||||||| |
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| T |
13868847 |
ttagttagttacattagttagtcgttattctcattggctata |
13868806 |
T |
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