View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_26 (Length: 239)
Name: NF15764_low_26
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 42740945 - 42741163
Alignment:
| Q |
3 |
ggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatagaa |
102 |
Q |
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| T |
42740945 |
ggacatgcaaagttgtgactcatgaaacataatgctgcacgccattaaattatcctttgacagcaacctatttcgaagaagtcttcaagctagcatagaa |
42741044 |
T |
|
| Q |
103 |
actttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctcttgggtaaacatcaactgattacccgatccgaataacc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42741045 |
actttcttgaaaacatgtttgtgccaaattaaatctgaaatagcattaaagttatgctcctcttgggtaaacatcaactgattacccgagccgaataacc |
42741144 |
T |
|
| Q |
203 |
accgataggatcaagcctt |
221 |
Q |
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|||||||| || ||||||| |
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| T |
42741145 |
accgatagaattaagcctt |
42741163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 21745091 - 21745307
Alignment:
| Q |
4 |
gacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatagaaa |
103 |
Q |
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| T |
21745091 |
gacatgcaaagttgtgactcatgagatataatgccgcacgccatcaaattatcctttgacaacaacctattttgaagaagtctccaaactagcatagaaa |
21745190 |
T |
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| Q |
104 |
ctttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctcttgggtaaacatcaactgattacccgatccgaataacca |
203 |
Q |
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| T |
21745191 |
ctttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctcctaggtaaacatcaactgattacccgagccgaataacca |
21745290 |
T |
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| Q |
204 |
ccgataggatcaagcct |
220 |
Q |
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| T |
21745291 |
ccgataggatcaagcct |
21745307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 27602096 - 27601933
Alignment:
| Q |
1 |
ccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatag |
100 |
Q |
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||||||| |||||| | ||||| ||| | ||||||| || ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||| || |||| |
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| T |
27602096 |
ccggacacgcaaagctatgacttgtgaaatataatgtcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagcaagaatag |
27601997 |
T |
|
| Q |
101 |
aaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctc |
164 |
Q |
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| T |
27601996 |
aaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcattagagttatgcacctc |
27601933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 2820797 - 2820756
Alignment:
| Q |
49 |
aaattatcctttgactgcaacctatttcgaagaagtcttcaa |
90 |
Q |
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| T |
2820797 |
aaattatcctttgatggcaaccaatttcgaagaagtcttcaa |
2820756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 28308502 - 28308637
Alignment:
| Q |
49 |
aaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcat |
148 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||| || |||||||| ||| | ||| || |||||||||||| ||||||||||||||| |
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| T |
28308502 |
aaattatcctttgacagcaacctattccgaagaagtcttcaagcaagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcat |
28308601 |
T |
|
| Q |
149 |
taaagttatgcacctcttgggtaaacatcaactgat |
184 |
Q |
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| T |
28308602 |
tagagttatacatctcctgagtagacaacaactgat |
28308637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 10389090 - 10389021
Alignment:
| Q |
22 |
tcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaag |
91 |
Q |
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|||||||| |||||||||| ||||| |||||| |||||||| | | |||||| ||||||||||| |||| |
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| T |
10389090 |
tcatgagagataatgttgcgcgccaccaaattaccctttgacggtagcctattccgaagaagtctccaag |
10389021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 30626332 - 30626368
Alignment:
| Q |
25 |
tgagacataatgttgcacgccattaaattatcctttg |
61 |
Q |
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||||| ||||||||||||||||||| ||||||||||| |
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| T |
30626332 |
tgagaaataatgttgcacgccattagattatcctttg |
30626368 |
T |
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