View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_29 (Length: 224)
Name: NF15764_low_29
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_29 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 109210 - 109428
Alignment:
| Q |
1 |
aatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
109210 |
aatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaacgagtttggg |
109309 |
T |
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| Q |
101 |
aattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatctccttgttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109310 |
aattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatctccttgttta |
109409 |
T |
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| Q |
201 |
ggtttttgatgcctatgct |
219 |
Q |
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||||||||||||||||||| |
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| T |
109410 |
ggtttttgatgcctatgct |
109428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 90413 - 90613
Alignment:
| Q |
1 |
aatatcgtcttcactttgttaactatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttggg |
100 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || || ||||| |
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| T |
90413 |
aatatcgttttcactttgtcaactatgttaccaggtgtgcggacgataagccatatgtgcctatatatcaggtttccaaagaaaaggcgaaaagcttggg |
90512 |
T |
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| Q |
101 |
aattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatctccttgttta |
200 |
Q |
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| T |
90513 |
acttgaatatactcctttggaagtgagcatcaaggagactgttgaaagtttgaaagaaaagaagttcgccaacctttaatttgtggtatctccttgttta |
90612 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
90613 |
g |
90613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 45 - 191
Target Start/End: Original strand, 2708966 - 2709120
Alignment:
| Q |
45 |
gataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatca--------agga |
136 |
Q |
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| T |
2708966 |
gataagccgtacatgcctacatatcaggtttccaaagaaaaggtcaagagcttgggaattgaattaactcttttggaagtcagcatcaaggagagtagga |
2709065 |
T |
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| Q |
137 |
aactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatatct |
191 |
Q |
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| T |
2709066 |
gactgtggaaaatttgaaagaaaagaagttcgccaacttttaatttgtgatatct |
2709120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 25936423 - 25936549
Alignment:
| Q |
58 |
tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaaggaaactgttgaaagtttgaaaga |
157 |
Q |
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|||| ||||||||| |||| || |||||||| |||||||||||||| || | |||| |||||||||| | | ||||||| ||||| ||||| || | ||| |
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| T |
25936423 |
tgccaacatatcagatttctaaggaaaaggctaagagtttgggaatcgagtttacttctttggaagtcaccctcaaggagactgtggaaagcttcagaga |
25936522 |
T |
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| Q |
158 |
aaagaagttcgtcaacttttaatttgt |
184 |
Q |
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| T |
25936523 |
gaaaaagatcgtcaacttttaatttgt |
25936549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 26105073 - 26105151
Alignment:
| Q |
58 |
tgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttggaagtgagcatcaagga |
136 |
Q |
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| T |
26105073 |
tgccaacatatcagatttccaaggaaaaggccaagagctttggaatcgagtttactcctttggaaatcagcctcaagga |
26105151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 5922 - 6089
Alignment:
| Q |
22 |
actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga |
121 |
Q |
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||||||||| |||||| || ||||||||||| | ||| |||| |||| ||||||||||||||||||||| || ||| |||||| || ||| |||| |
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| T |
5922 |
actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga |
6021 |
T |
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| Q |
122 |
agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat |
189 |
Q |
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||||||| | | || | || |||||||| ||||| || ||||| | ||||| ||||||||||||| |
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| T |
6022 |
agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat |
6089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 29550249 - 29550416
Alignment:
| Q |
22 |
actatgttaccaggtgtgcggacgataagccatatgtgcctacatatcagttttccaaagaaaaggcaaagagtttgggaattgaatatactcctttgga |
121 |
Q |
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||||||||| |||||| || ||||||||||| | ||| |||| |||| ||||||||||||||||||||| || ||| |||||| || ||| |||| |
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| T |
29550249 |
actatgttatcaggtgcgcagacgataagcctttgatgcaaacatttcaggtttccaaagaaaaggcaaagaccttaggagttgaatttattcccctgga |
29550348 |
T |
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| Q |
122 |
agtgagcatcaaggaaactgttgaaagtttgaaagaaaagaagttcgtcaacttttaatttgtgatat |
189 |
Q |
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||||||| | | || | || |||||||| ||||| || ||||| | ||||| ||||||||||||| |
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| T |
29550349 |
agtgagccttagagagatcgtagaaagtttcaaagataaaaagtttgctaacttctaatttgtgatat |
29550416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 29556747 - 29556792
Alignment:
| Q |
63 |
acatatcagttttccaaagaaaaggcaaagagtttgggaattgaat |
108 |
Q |
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|||| |||| ||||||||||||||||||||| ||||||||||||| |
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| T |
29556747 |
acatttcagatttccaaagaaaaggcaaagacgttgggaattgaat |
29556792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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