View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_3 (Length: 586)
Name: NF15764_low_3
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 5054760 - 5054194
Alignment:
| Q |
1 |
gccgtaatattttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccacatatattaaactacggaaactaaataaaat |
100 |
Q |
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| T |
5054760 |
gccgtaatattttacctataaaacaaaaaattaaatcccacctacaaacacttgtttaatgcatatccacatatattaaactacggaaactaaataaaat |
5054661 |
T |
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| Q |
101 |
aataacacattcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcagctattcaagaaatgtagttagtacgttac |
200 |
Q |
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| T |
5054660 |
aagaacccattcgatgcactcaataattcatgagtttcatgggtgacacaaaagcacagtgttcctggcagctattcaagaaatttagttagtacgttac |
5054561 |
T |
|
| Q |
201 |
tttcttatgggagctattgtttgtagtttactattaactaaatattaaaaatcaagtggttacaaaaagcaggtgcatgtgatgatattataagacatga |
300 |
Q |
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| T |
5054560 |
tttcttatgggagctattgtttgtagtttactattaactaaatattaaaaatcaagtggttacaaaaagcaggtgcatgtgatgatattataagacatga |
5054461 |
T |
|
| Q |
301 |
tagtgtcctaacatgaagaaaacaaatagaaagtttcaaacaaatattgtcatgctggacaaactctcacccgcgtgtgattcatatgctttctccaaaa |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054460 |
taatgtcctaacatgaagaaaacaaatagaaagtttcaaacaaatattgtcatgctggacaaactctcacccgcgtgtgattcatatgctttctccaaaa |
5054361 |
T |
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| Q |
401 |
caactagctgccaccaactctcacatttcatataagatattggtaattcacaacataggtgtagagttataaaatccttctactgtttgtttttaatttt |
500 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
5054360 |
caactacctgccaccaactctcacatttcatataagatattggtaattcacaacatag--gtagagttataaaattcatctactgtttgtttttaatttt |
5054263 |
T |
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| Q |
501 |
gccattctttttcttaaattcatcgttcgtaggtaaaagcaattctgtttacttttagaacatcttttg |
569 |
Q |
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| T |
5054262 |
gccattctttttcttaaattcatcgttcgtaggtaaaagcaattctgtttacttttagaacatattttg |
5054194 |
T |
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