View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_30 (Length: 217)
Name: NF15764_low_30
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 43533205 - 43533388
Alignment:
| Q |
16 |
aatatacggtcagtgcctacctgctttttaggaacttggaatatggttgatcattgtaagttatagagccaccaatatttggttgacttaacctagctcc |
115 |
Q |
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| T |
43533205 |
aatatacggtcagtgcctacctgctttttaggaacttggaatatggttgatcattgtaagttatagagccaccaatatttggttgacttaacctagctcc |
43533304 |
T |
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| Q |
116 |
aagtagatttaacaaagaagttttaccacctcctgagggacccatcaatgctaaaacttcccctggatttacacaaccagtgat |
199 |
Q |
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| T |
43533305 |
aagtagatttaacaaagaagttttaccacctcctgagggacccatcaatgctaaaacttcccctggatttacacaaccagtgat |
43533388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 24126115 - 24125950
Alignment:
| Q |
34 |
acctgctttttaggaacttggaatatggttgatcattgtaagttatagagccaccaatatttggttgacttaacctagctccaagtagatttaacaaaga |
133 |
Q |
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| T |
24126115 |
acctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccaccaattgtgggctggcttattcttcctccaaggagatttaaaagact |
24126016 |
T |
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| Q |
134 |
agttttaccacctcctgagggacccatcaatgctaaaacttcccctggatttacacaaccagtgat |
199 |
Q |
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| T |
24126015 |
tgtctttccacttcctgagggacccatcaatgccaaaacttcacctggatttacagaaccactgat |
24125950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 24144015 - 24143962
Alignment:
| Q |
141 |
ccacctcctgagggacccatcaatgctaaaacttcccctggatttacacaacca |
194 |
Q |
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| T |
24144015 |
ccacttcctgatggacccatcattgccaaaacttcacctggatttacagaacca |
24143962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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