View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15764_low_31 (Length: 211)

Name: NF15764_low_31
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15764_low_31
NF15764_low_31
[»] chr8 (7 HSPs)
chr8 (1-196)||(34739081-34739276)
chr8 (3-48)||(9936806-9936851)
chr8 (1-54)||(11815815-11815868)
chr8 (1-33)||(14740737-14740769)
chr8 (1-33)||(34201066-34201098)
chr8 (1-41)||(38902483-38902523)
chr8 (2-54)||(45321968-45322020)
[»] chr4 (11 HSPs)
chr4 (1-54)||(37496690-37496743)
chr4 (1-54)||(34589726-34589779)
chr4 (1-53)||(19230329-19230381)
chr4 (2-53)||(8820395-8820446)
chr4 (1-40)||(18513261-18513300)
chr4 (1-34)||(5654611-5654644)
chr4 (5-54)||(7012052-7012101)
chr4 (1-34)||(10546154-10546187)
chr4 (3-40)||(14465316-14465353)
chr4 (5-53)||(20743302-20743350)
chr4 (2-34)||(43188618-43188650)
[»] chr7 (5 HSPs)
chr7 (1-48)||(38134426-38134473)
chr7 (1-54)||(36013818-36013872)
chr7 (3-48)||(35238206-35238251)
chr7 (1-54)||(42720910-42720963)
chr7 (1-34)||(44172910-44172943)
[»] chr5 (11 HSPs)
chr5 (1-48)||(16864010-16864057)
chr5 (2-54)||(19737503-19737555)
chr5 (1-40)||(28296328-28296367)
chr5 (1-64)||(32428946-32429009)
chr5 (1-35)||(11596475-11596509)
chr5 (4-54)||(41558706-41558756)
chr5 (5-54)||(21137675-21137724)
chr5 (1-53)||(2039869-2039921)
chr5 (5-53)||(4344729-4344777)
chr5 (1-49)||(32630755-32630803)
chr5 (1-53)||(38749583-38749635)
[»] chr1 (6 HSPs)
chr1 (1-40)||(11412788-11412827)
chr1 (1-48)||(3921659-3921706)
chr1 (1-34)||(11571591-11571624)
chr1 (1-54)||(40686778-40686831)
chr1 (1-34)||(40747793-40747826)
chr1 (1-53)||(43328454-43328506)
[»] chr6 (11 HSPs)
chr6 (3-53)||(15443682-15443732)
chr6 (1-40)||(2140501-2140540)
chr6 (7-54)||(13211307-13211354)
chr6 (1-47)||(10031563-10031609)
chr6 (1-47)||(17168887-17168933)
chr6 (5-39)||(29711263-29711297)
chr6 (1-54)||(8623191-8623244)
chr6 (7-60)||(25038097-25038150)
chr6 (10-54)||(10760870-10760914)
chr6 (1-53)||(17422275-17422327)
chr6 (10-54)||(34431278-34431322)
[»] chr3 (6 HSPs)
chr3 (3-34)||(40697880-40697911)
chr3 (2-40)||(9210846-9210884)
chr3 (7-48)||(13799496-13799537)
chr3 (1-54)||(41319330-41319383)
chr3 (6-54)||(15544679-15544727)
chr3 (5-53)||(20691306-20691354)
[»] chr2 (5 HSPs)
chr2 (1-40)||(40681982-40682021)
chr2 (1-35)||(18570977-18571011)
chr2 (5-54)||(12748670-12748719)
chr2 (1-34)||(30563415-30563448)
chr2 (3-39)||(2073943-2073979)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-39)||(102906-102944)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-54)||(18128-18181)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-54)||(225288-225341)
[»] scaffold0571 (1 HSPs)
scaffold0571 (2-34)||(7696-7728)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 34739081 - 34739276
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtctctgtcatgtgactgtgtttatgcttcaaagctcttattaagaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34739081 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcggtgtctctgtcatgtgactgtgtttatgcttcatagctcttattaagaact 34739180  T
Q  101 gtattgtgtaatttttaacatttcacagtaataactccagcaaaataatgggttttatttataatttnnnnnnntagctgaaagcgttgttcttta 196  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  34739181 gtattgtgtaatttttaacatttaacagtaataactccagcaaaataatgggttttatttataatttaagaaaatagctgaaagcgttgttcttta 34739276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 9936851 - 9936806
Alignment:
Q  3 attgaattatgtcattttctcatattattatcgatgtcaacgtgtc 48  Q
    |||||||||| ||||||||| | ||||||||||||||| |||||||    
T  9936851 attgaattatatcattttcttaaattattatcgatgtcgacgtgtc 9936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11815868 - 11815815
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||| ||||||  |||||||||| |||||||| | ||||||||||||||||||    
T  11815868 acattcaattataacattttctcaaattattattggtgtcaacgtgtcagtgtc 11815815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14740769 - 14740737
Alignment:
Q  1 acattgaattatgtcattttctcatattattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  14740769 acattgaattatgtcattttctcacattattat 14740737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34201066 - 34201098
Alignment:
Q  1 acattgaattatgtcattttctcatattattat 33  Q
    |||||||||||||||||||||||| ||||||||    
T  34201066 acattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38902523 - 38902483
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtca 41  Q
    ||||| ||||||||||||||||||||||||| ||| |||||    
T  38902523 acatttaattatgtcattttctcatattattgtcggtgtca 38902483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 45322020 - 45321968
Alignment:
Q  2 cattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||||||||||| |||||| || || |||||||||||| ||||||| |||||    
T  45322020 cattgaattatgttattttcccaaatcattatcgatgtcgacgtgtctgtgtc 45321968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37496743 - 37496690
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||||||||||||    
T  37496743 acattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtc 37496690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34589726 - 34589779
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||||||||||||||| ||| |||||| |||||| ||||| |||||    
T  34589726 acattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtccgtgtc 34589779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19230329 - 19230381
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    |||||||||||||| ||||||||| ||||||||| ||||| | ||||||||||    
T  19230329 acattgaattatgttattttctcaaattattatctatgtccatgtgtcagtgt 19230381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 8820446 - 8820395
Alignment:
Q  2 cattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    ||||||||||||| ||||| ||| ||||||||||||||  ||||||||||||    
T  8820446 cattgaattatgtgattttatcaaattattatcgatgttgacgtgtcagtgt 8820395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18513261 - 18513300
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtc 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  18513261 acattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5654611 - 5654644
Alignment:
Q  1 acattgaattatgtcattttctcatattattatc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  5654611 acattgaattatgtcattttctcaaattattatc 5654644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 7012101 - 7012052
Alignment:
Q  5 tgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||||||||||| |||||||||| ||||  |||||| |||||    
T  7012101 tgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtc 7012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10546187 - 10546154
Alignment:
Q  1 acattgaattatgtcattttctcatattattatc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  10546187 acattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 14465316 - 14465353
Alignment:
Q  3 attgaattatgtcattttctcatattattatcgatgtc 40  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  14465316 attgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 20743302 - 20743350
Alignment:
Q  5 tgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    |||||||||||||||||||| |||||||||  ||||  |||||||||||    
T  20743302 tgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 43188650 - 43188618
Alignment:
Q  2 cattgaattatgtcattttctcatattattatc 34  Q
    ||||||||||||||||||||||| |||||||||    
T  43188650 cattgaattatgtcattttctcaaattattatc 43188618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38134426 - 38134473
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtc 48  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  38134426 acattgaattatgtcattttctcaaattattatcggtgtcaacatgtc 38134473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36013818 - 36013872
Alignment:
Q  1 acattgaattatgtcatttt-ctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||||||||||| |||| |||||||||  |||||| |||||||||||    
T  36013818 acattgaattatgtcatttttctcaaattattatcattgtcaatgtgtcagtgtc 36013872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 35238206 - 35238251
Alignment:
Q  3 attgaattatgtcattttctcatattattatcgatgtcaacgtgtc 48  Q
    |||||||||||||||||||||| | |||||||| |||||| |||||    
T  35238206 attgaattatgtcattttctcaaaatattatcggtgtcaatgtgtc 35238251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42720910 - 42720963
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||| |||||||| ||||| ||| ||||||| || ||||||||||||||||||    
T  42720910 acatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtc 42720963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44172910 - 44172943
Alignment:
Q  1 acattgaattatgtcattttctcatattattatc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  44172910 acattgaattatgtcattttctcaaattattatc 44172943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16864057 - 16864010
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtc 48  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||    
T  16864057 acattgaattatgtcattttctcgcattattatcaatgtcaacgtgtc 16864010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 19737503 - 19737555
Alignment:
Q  2 cattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||||||||||| ||||||||| |||||||||| | ||| ||||||||||||    
T  19737503 cattgaattatgtaattttctcaaattattatcggtttcagcgtgtcagtgtc 19737555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28296367 - 28296328
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtc 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  28296367 acattgaattatgtcattttctcaaattattatcggtgtc 28296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32428946 - 32429009
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtctctgtcatgt 64  Q
    |||||||||||||||| ||||||| |||||||||  ||||| | ||||||||||  ||||||||    
T  32428946 acattgaattatgtcactttctcaaattattatcagtgtcaccatgtcagtgtccgtgtcatgt 32429009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11596475 - 11596509
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11596475 acattgaattatgtcattttctcaaattattatcg 11596509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 41558706 - 41558756
Alignment:
Q  4 ttgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||||||||||||||||||| ||||||||   |||||| |||||||||||    
T  41558706 ttgaattatgtcattttctcaaattattatttgtgtcaatgtgtcagtgtc 41558756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 21137724 - 21137675
Alignment:
Q  5 tgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||||| |||||||||||| ||||||| |||||||  ||||||||||||    
T  21137724 tgaattacgtcattttctcagattattaccgatgtcggcgtgtcagtgtc 21137675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2039869 - 2039921
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    ||||||||| |||||||||||||| ||||||| || |||| ||||||| ||||    
T  2039869 acattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtccgtgt 2039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 4344777 - 4344729
Alignment:
Q  5 tgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    |||||||||||||||| ||| |||||||||| ||||| ||||| |||||    
T  4344777 tgaattatgtcattttttcaaattattatcggtgtcagcgtgttagtgt 4344729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32630755 - 32630803
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtca 49  Q
    |||||||||||| | ||||||||| |||||||||| ||||| |||||||    
T  32630755 acattgaattatataattttctcaaattattatcggtgtcagcgtgtca 32630803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38749583 - 38749635
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    |||||||||||||||||||| ||| |||||||||| |||| || |||| ||||    
T  38749583 acattgaattatgtcattttttcaaattattatcggtgtcgacatgtccgtgt 38749635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11412788 - 11412827
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtc 40  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  11412788 acattgaattatgtcattttctcatattattatcggtgtc 11412827  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3921706 - 3921659
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtc 48  Q
    |||||||||||||||||||||||| |||||||| |||||  |||||||    
T  3921706 acattgaattatgtcattttctcaaattattattgatgttgacgtgtc 3921659  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11571624 - 11571591
Alignment:
Q  1 acattgaattatgtcattttctcatattattatc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11571624 acattgaattatgtcattttctcaaattattatc 11571591  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40686778 - 40686831
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||| ||||||| ||| | | ||||||||||| |||||||||||||    
T  40686778 acattgaattatatcattttatcaaaattttatcgatgtcgacgtgtcagtgtc 40686831  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40747793 - 40747826
Alignment:
Q  1 acattgaattatgtcattttctcatattattatc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  40747793 acattgaattatgtcattttctcaaattattatc 40747826  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 43328506 - 43328454
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    ||||| |||||| ||||||||||| ||||||||   |||||||||||||||||    
T  43328506 acattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgt 43328454  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 15443732 - 15443682
Alignment:
Q  3 attgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    |||||||||||| ||||||||| |||||||| |||||| ||||||||||||    
T  15443732 attgaattatgttattttctcaaattattattgatgtcgacgtgtcagtgt 15443682  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2140501 - 2140540
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtc 40  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  2140501 acattgaattatgtcattttctcaaattattatcaatgtc 2140540  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 13211307 - 13211354
Alignment:
Q  7 aattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||||||||| ||||||||| ||||| ||||||| |||||    
T  13211307 aattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtc 13211354  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10031609 - 10031563
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgt 47  Q
    |||||||||||||||||||||||| | | |||||| |||||||||||    
T  10031609 acattgaattatgtcattttctcaaaattttatcggtgtcaacgtgt 10031563  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 17168933 - 17168887
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgt 47  Q
    |||||||||||||||||||| ||| ||||||||| ||||| ||||||    
T  17168933 acattgaattatgtcattttttcaaattattatcaatgtcgacgtgt 17168887  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 29711297 - 29711263
Alignment:
Q  5 tgaattatgtcattttctcatattattatcgatgt 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  29711297 tgaattatgtcattttctcaaattattatcgatgt 29711263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8623244 - 8623191
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||| ||| |||||||||||| | ||| |||||| ||||||||||||||||||    
T  8623244 acattcaatgatgtcattttctaaaattgttatcggtgtcaacgtgtcagtgtc 8623191  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 25038097 - 25038150
Alignment:
Q  7 aattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtctctgtc 60  Q
    |||||||| ||||||||| ||||||| || ||||||||||||||| ||| ||||    
T  25038097 aattatgtaattttctcaaattattaacggtgtcaacgtgtcagtatctgtgtc 25038150  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 10760870 - 10760914
Alignment:
Q  10 tatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||||||||||||| |||||||||  |||| |||||||||||||    
T  10760870 tatgtcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17422275 - 17422327
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    ||||| |||||| ||||||||||| |||||||||| |||| |||||| |||||    
T  17422275 acattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgt 17422327  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 34431278 - 34431322
Alignment:
Q  10 tatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||||||||| | | |||||||||||||| ||||||||||||||    
T  34431278 tatgtcattttttaaaattattatcgatgttaacgtgtcagtgtc 34431322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 40697880 - 40697911
Alignment:
Q  3 attgaattatgtcattttctcatattattatc 34  Q
    ||||||||||||||||||||||||||||||||    
T  40697880 attgaattatgtcattttctcatattattatc 40697911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 9210846 - 9210884
Alignment:
Q  2 cattgaattatgtcattttctcatattattatcgatgtc 40  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  9210846 cattgaattatgtcattttctcaaattattatcgttgtc 9210884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 13799537 - 13799496
Alignment:
Q  7 aattatgtcattttctcatattattatcgatgtcaacgtgtc 48  Q
    |||||||||||||||||| | |||||||| ||||||||||||    
T  13799537 aattatgtcattttctcaaactattatcggtgtcaacgtgtc 13799496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41319330 - 41319383
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||||||||||| ||| |||||||| | |||| ||||||| |||||    
T  41319330 acattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 15544727 - 15544679
Alignment:
Q  6 gaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    ||||||||| ||||| ||| ||||||| || ||||||||||||||||||    
T  15544727 gaattatgtgattttatcaaattattagcggtgtcaacgtgtcagtgtc 15544679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 20691354 - 20691306
Alignment:
Q  5 tgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgt 53  Q
    |||||||||||||||||||| |||||||||  | || ||||||||||||    
T  20691354 tgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgt 20691306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40682021 - 40681982
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtc 40  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  40682021 acattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18571011 - 18570977
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  18571011 acattgaattatgtcattttctcaaattattatcg 18570977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 12748719 - 12748670
Alignment:
Q  5 tgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||| ||||||||||||||| ||||||||| |||||| |||||| |||||    
T  12748719 tgaactatgtcattttctcaaattattatccatgtcagcgtgtccgtgtc 12748670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30563448 - 30563415
Alignment:
Q  1 acattgaattatgtcattttctcatattattatc 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30563448 acattgaattatgtcattttctcaaattattatc 30563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 2073979 - 2073943
Alignment:
Q  3 attgaattatgtcattttctcatattattatcgatgt 39  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  2073979 attgaattatgttattttctcaaattattatcgatgt 2073943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 102944 - 102906
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgt 39  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  102944 acattgaattatatcattttctcaaattattatcgatgt 102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18128 - 18181
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||||||||||| ||||||||| | | |||||| |||| |||||||||||||    
T  18128 acattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtc 18181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 225288 - 225341
Alignment:
Q  1 acattgaattatgtcattttctcatattattatcgatgtcaacgtgtcagtgtc 54  Q
    |||||| ||||||||||||||||| |||||||||  ||||  ||||||||||||    
T  225288 acattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtc 225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 7728 - 7696
Alignment:
Q  2 cattgaattatgtcattttctcatattattatc 34  Q
    ||||||||||||||||||||||| |||||||||    
T  7728 cattgaattatgtcattttctcaaattattatc 7696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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