View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_6 (Length: 467)
Name: NF15764_low_6
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 181 - 452
Target Start/End: Complemental strand, 26028542 - 26028271
Alignment:
| Q |
181 |
ttggtgatttaacaaataattcgcagttcttgaaattagaggaaagtatgttggctaaaccaagaggttaccaaaggcagcttcaaaatagaaaggaatg |
280 |
Q |
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| T |
26028542 |
ttggtgatttaacaaataattcgcagttcttgaaattagaggaaagtatgttggctaaaccaagaggttaccaaaggcagcttcaaaatagaaaggaatg |
26028443 |
T |
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| Q |
281 |
gtttcatatcattattagcatttttcattttatcttatccaaaaagaacacaatggaaataaaagaataaaggttgtatacaatatacatgattcagccc |
380 |
Q |
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| T |
26028442 |
gtttcatatcattattagcatttttcattttatcttatccaaaaagaacacaatggaaataaaagaataaaggttgtatacaatatacatgattcagccc |
26028343 |
T |
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| Q |
381 |
ttttggatctattttatttcttttcacataatggaattgattctgcagttttaaaattacatctgatgatac |
452 |
Q |
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| T |
26028342 |
ttttggatctattttatttcttttcacataatggaattgattctgcagttttaaaattacatctgatgatac |
26028271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 26028714 - 26028604
Alignment:
| Q |
9 |
gacatcatcacataaaatataagaacctttgattgaagatatccatgttcaggtaggtttggctttagcacatccaacaaaaatgctgttgcctcgcgga |
108 |
Q |
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| T |
26028714 |
gacaacatcacataaaatataagaacctttgattgaagatatccatgttcaggtaggtttggctttagcacatccaacaaaaatgctgttgcctcgcgga |
26028615 |
T |
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| Q |
109 |
tcaagttcctc |
119 |
Q |
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| T |
26028614 |
tcaagttcctc |
26028604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 30500248 - 30500337
Alignment:
| Q |
22 |
aaaatataagaacctttgattgaagatatccatgttcaggtaggtttggctttagcacatccaacaaaaatgctgttgcctcgcggatca |
111 |
Q |
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|||||| | ||||||||| |||||||| ||||||||||||||||| |||||| |||| ||||||||||| | |||||||| ||||||| |
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| T |
30500248 |
aaaataaaggaacctttgtttgaagatgtccatgttcaggtaggtctggcttcagcagttccaacaaaaaggtagttgcctcacggatca |
30500337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 30540591 - 30540680
Alignment:
| Q |
22 |
aaaatataagaacctttgattgaagatatccatgttcaggtaggtttggctttagcacatccaacaaaaatgctgttgcctcgcggatca |
111 |
Q |
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| T |
30540591 |
aaaataaaggaacctttgtttgaagatgtccatgttcaggtaggtctggcttcagcagttccaacaaaaaggtagttgcctcacggatca |
30540680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 35738189 - 35738110
Alignment:
| Q |
32 |
aacctttgattgaagatatccatgttcaggtaggtttggctttagcacatccaacaaaaatgctgttgcctcgcggatca |
111 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||||| ||||||| | ||| ||||||||||| ||||||| |
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| T |
35738189 |
aacctttgtttgaaggaatccatgttcaggtaaatttggctttaaaacatccaggagaaaagctgttgcctcacggatca |
35738110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Complemental strand, 8357388 - 8357351
Alignment:
| Q |
378 |
cccttttggatctattttatttcttttcacataatgga |
415 |
Q |
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| T |
8357388 |
cccttttggatctattttatttcttttcaaagaatgga |
8357351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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