View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_7 (Length: 452)
Name: NF15764_low_7
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 201 - 437
Target Start/End: Complemental strand, 8577679 - 8577444
Alignment:
| Q |
201 |
cattccacctactatacaaaatttgga-ttttcctca----attaacaatggagcttatcctagataagttgtagtataaataagtgagaagcacacatt |
295 |
Q |
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| T |
8577679 |
cattccacctactatacaaaatttggaattttcctcatttaattaacaatggagcttaacctagatgagttgtagtataaataagtgagaagcacacatt |
8577580 |
T |
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| Q |
296 |
tgagaacaataagagctttggagagatcattccagctaccatctttttcttcaatccatataatatgattcctttcataacctcaccattaacattaaca |
395 |
Q |
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| T |
8577579 |
tgagaacaataagagttttggagagatcattccagctaccatcattttcttcaatccatataatatgattcctttcataacctcaccattaacatta--- |
8577483 |
T |
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| Q |
396 |
ttaacatgttcatctcctttaatcctctcaacatcctttttg |
437 |
Q |
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| T |
8577482 |
---acatgtgcatctccttcaatcctctcaacatactttttg |
8577444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 8597225 - 8597337
Alignment:
| Q |
17 |
agatattgaagccaactattggagtattccctttattttttatattgagtaaatannnnnnnagtagaccaaaaaacattagtttttcgtcttattcaat |
116 |
Q |
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| T |
8597225 |
agatattgaagccaacggttggaatattccctttgttttttatattgagtaaatatttttttagtagaccaaaatacattagtttttcgtcttattccat |
8597324 |
T |
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| Q |
117 |
gtactctaacaaa |
129 |
Q |
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| T |
8597325 |
gtactctaacaaa |
8597337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 8597414 - 8597451
Alignment:
| Q |
272 |
ataaataagtgagaagcacacatttgagaacaataaga |
309 |
Q |
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| T |
8597414 |
ataaataagtgagaagcacacatttgagaacattaaga |
8597451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 8577827 - 8577782
Alignment:
| Q |
87 |
aaaaaacattagttttt-cgtcttattcaatgtactctaacaaaca |
131 |
Q |
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| T |
8577827 |
aaaaaacattagttttttcgtgttattccatgtactctaacaaaca |
8577782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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