View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15764_low_9 (Length: 422)
Name: NF15764_low_9
Description: NF15764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15764_low_9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 42740359 - 42740775
Alignment:
| Q |
17 |
agattgaaccgatgagaccttcggtttatggttaaatcagttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaatatga |
116 |
Q |
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| T |
42740359 |
agattgaaccgatgagaccttcggttcatggttcaatcggttcaaccgattaaaccgttatgaaccattattgaaccggttaatgaataaataaatatga |
42740458 |
T |
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| Q |
117 |
agataaatcaagaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattgggaccaagtcca |
216 |
Q |
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| T |
42740459 |
agataaatcaagaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttaattgactcattgggcccaagtcca |
42740558 |
T |
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| Q |
217 |
aatcaaagtatccaaccctagatataaattagttgttgtatgactttgtatcacatttgttggtaatatttcctaagtcgccgctaacaaactttctctt |
316 |
Q |
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| T |
42740559 |
aatcaaagtatccaaccctagatataaattagttgttgtatgac-ttgtatcacatttgttagtaatatttcctaagtcgccgctaacaaactttctctt |
42740657 |
T |
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| Q |
317 |
tcgttctactgtagttcatgtttcnnnnnnncctt------------tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaa |
404 |
Q |
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| T |
42740658 |
tcgttctactgtagttcatgtttcttttttcctttccttattccttctccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaa |
42740757 |
T |
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| Q |
405 |
aagcttaacatcacactc |
422 |
Q |
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| T |
42740758 |
aagcttaacatcacactc |
42740775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 21744565 - 21744809
Alignment:
| Q |
14 |
cagagattgaaccgatgagaccttcggtttatggttaaatcagttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaata |
113 |
Q |
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| T |
21744565 |
cagagattgaaccgatgagatcttcggttcatggttcaatcggttcaaccggttaaaccgttatgaaccattattgaaccggttaatgaataaataaata |
21744664 |
T |
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| Q |
114 |
tgaagataaatcaagaaaaacctctaaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattgggaccaagt |
213 |
Q |
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| T |
21744665 |
tgaagataaatcaagaaaaacct-taaagattttattaattttcatattttaatgcaaccctagatattaatccatttagttgactcattggcccctagt |
21744763 |
T |
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| Q |
214 |
ccaaatcaaagtatccaaccctagatataaatt--agttgttgtat |
257 |
Q |
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| T |
21744764 |
ccaaatcaaagtatccaaccctagatataaattacagttgttgtat |
21744809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 21744851 - 21744921
Alignment:
| Q |
352 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaaaagcttaacatcacactc |
422 |
Q |
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| T |
21744851 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaattaaaagcttaacatcccactc |
21744921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 20218081 - 20218029
Alignment:
| Q |
14 |
cagagattgaaccgatgagaccttcggtttatggttaaatcagttcaaccggt |
66 |
Q |
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| T |
20218081 |
cagagattgaaccggtgagaccttcggttcatggttcaaccggttgaaccggt |
20218029 |
T |
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