View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15765_low_1 (Length: 632)
Name: NF15765_low_1
Description: NF15765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15765_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 10 - 612
Target Start/End: Original strand, 44143019 - 44143630
Alignment:
| Q |
10 |
catcatcataacatgttatatgtcctgaagtttgagtatacgttttatcaatcccaactatgcccgagcattgtaaaggtagcaagttttccggctaact |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44143019 |
catcatcataacatgttatatgtcctgaagtttgagtatacgtcttatcaatcccaactatgcccgagcattgtaaaggtagcaagttttccggctaact |
44143118 |
T |
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| Q |
110 |
caggtccatattaataatgttaaaaaataaacaaacactattctatgggtgttgtagcaatggcgactgctaaaca--------------ttcgaatatc |
195 |
Q |
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| T |
44143119 |
caggtccatattaataatgttaaaaa-taaacaaacactattctatgggtgttgtagcaatggcgactgctaaacaaaaggaactaatcattcgaatatc |
44143217 |
T |
|
| Q |
196 |
catcatccatggggaacgtatggcctccctccccttctccttaaataaataataatcggataaattacattttttatcactcgcaccttcaatggtgcaa |
295 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44143218 |
tatcatccatggggtacgtatggcctccctccccttctccttaaataaataataataggataaattacattttttatcactcgcaccttcaatggtgcaa |
44143317 |
T |
|
| Q |
296 |
cccaaattaatgtatctcttagcggagtctacattgccacatcatcttaaagaacagttgaactgaatcctattaaaagaaccaacatttggcataagta |
395 |
Q |
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| T |
44143318 |
cccaaat----gtatctcttagtggagtctacattgccacatcatcttaaagaacagttgaactgaatcctattaaaagaaccaacatttggcataagta |
44143413 |
T |
|
| Q |
396 |
gttgagtattaatagctaagtcgtcaactgacatctaaatataactcaaattttagataaactgtcagatactatttcagaaaccaaaataaataacttt |
495 |
Q |
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| T |
44143414 |
gttgagtattaatagctaagtcgtcaactgacatctaaatataactcaaattttagataaactgtcagatactatttcagaaaccaaaataaataacttt |
44143513 |
T |
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| Q |
496 |
tctagcaattactattgacaaataatttaacaacttaacaatgtagtacttcatgcttcatcaaagaagaaagaaataaccatatatgatatagaaaaag |
595 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44143514 |
tctagcaattactattgacaaataatttaacaacctaacaatgtagtacatcatgcttcataaaagaagaaagaaataaccatatatgatatagaaaaag |
44143613 |
T |
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| Q |
596 |
actctcaaattaagtat |
612 |
Q |
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||||||||||||||||| |
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| T |
44143614 |
actctcaaattaagtat |
44143630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 44122254 - 44122434
Alignment:
| Q |
11 |
atcatcataacatgttatatgtcctgaagtttgagtatacgttttatcaatcccaactatg----cccgagcattgtaaagg--tagcaagttttccggc |
104 |
Q |
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| T |
44122254 |
atcatcattacatgttatatgtccagaagtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagc |
44122353 |
T |
|
| Q |
105 |
taactcaggtccatattaataatgttaaaaaataaacaaacactattctatgggtgttgtagcaatggcgactgctaaaca |
185 |
Q |
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||||||| ||||| ||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |
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| T |
44122354 |
taactcaagtccaaattaatattgttagaaaataaacaaactttattctatgagtgttgtagcaatggcgactgttaaaca |
44122434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 350
Target Start/End: Original strand, 44122475 - 44122603
Alignment:
| Q |
219 |
cctccctccccttctccttaaataaataataatcggataaattacatttttt-atcactc---gcaccttcaatggtgcaacccaaattaatgtatctct |
314 |
Q |
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||||||||||| |||| ||||||||| |||| |||||||||||||||||| ||| | ||||||||||||||||||||||||| |||| | |
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| T |
44122475 |
cctccctccccatctcattaaataaacaata---ggataaattacatttttttatccttttgagcaccttcaatggtgcaacccaaat----gtatagtt |
44122567 |
T |
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| Q |
315 |
tagcggagtctacattgccacatcatcttaaagaac |
350 |
Q |
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||| ||||||||||||||||| | |||||||||||| |
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| T |
44122568 |
tagtggagtctacattgccacgttatcttaaagaac |
44122603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 215 - 368
Target Start/End: Original strand, 50063578 - 50063712
Alignment:
| Q |
215 |
atggcctccctccccttctccttaaataaata--ataatcggataaattacattttttatcactcgcaccttcaatggtgcaacccaaattaatgtatct |
312 |
Q |
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||||| ||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50063578 |
atggcatccctcctcttctccttaaataaatataagaataggataaattacattttttatcactcgcaccttcaatggtgca------------------ |
50063659 |
T |
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| Q |
313 |
cttagcggagtctacattgccacatcatcttaaagaacagttgaactgaatcctat |
368 |
Q |
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| T |
50063660 |
---agcggagtctacattgccacatcatcttaaagaacagttgaactgaatcctat |
50063712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 50032021 - 50032194
Alignment:
| Q |
11 |
atcatcataacatgttatatgtcctgaagtttgagtatacgttttatcaatcccaactatg----cccgagcattgtaaagg--tagcaagttttccggc |
104 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||| || | ||||||| || |||| |||||| ||||||| |||||| |||||| || |
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| T |
50032021 |
atcatcattacatgttatatgtccagaagtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagc |
50032120 |
T |
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| Q |
105 |
taactcaggtccatattaataatgttaaaaaataaacaaacactattctatgggtgttgtagcaatggcgactg |
178 |
Q |
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||||||| ||||| ||||||| ||||| ||||||||||||| |||| |||| |||||||||||||||| |||| |
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| T |
50032121 |
taactcaagtccaaattaatattgttagaaaataaacaaactttattttatgagtgttgtagcaatggcaactg |
50032194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 50024903 - 50025043
Alignment:
| Q |
11 |
atcatcataacatgttatatgtcctgaagtttgagtatacgttttatcaatcccaactatg----cccgagcattgtaaagg--tagcaagttttccggc |
104 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||| || | ||||||| || |||| |||||| ||||||| |||||| |||||| || |
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| T |
50024903 |
atcatcattacatgttatatgtccagaagtttgagtatatgtctgatcaatctcagctatatattcccgagtcaagtaaaggaatagcaaattttccagc |
50025002 |
T |
|
| Q |
105 |
taactcaggtccatattaataatgttaaaaaataaacaaac |
145 |
Q |
| |
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||||||| ||||| ||||||| ||||| ||||||||||||| |
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| T |
50025003 |
taactcaagtccaaattaatattgttagaaaataaacaaac |
50025043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 50063500 - 50063538
Alignment:
| Q |
10 |
catcatcataacatgttatatgtcctgaagtttgagtat |
48 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
50063500 |
catcatcataacatgttatatgtcctgaagtttgagtat |
50063538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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