View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15765_low_2 (Length: 588)
Name: NF15765_low_2
Description: NF15765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15765_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 327 - 572
Target Start/End: Complemental strand, 46009695 - 46009450
Alignment:
| Q |
327 |
tgattatgtctcttatataaacatgaaaaagatagtacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatcatataca |
426 |
Q |
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| T |
46009695 |
tgattatgtctaatatataaacatgaaaaagatagtacgtaccttgacaaaaaccaaaggagaaaatgcaagatcaggaccaagcacatgatcatataca |
46009596 |
T |
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| Q |
427 |
agttcatcaatagagtactctttctcatcaaaccattcacgcagtgtattctcacagtgtgactctgctattcgcacacccgcgtcgttgcacttgataa |
526 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009595 |
agttcatcaacagagtactctttctcatccaaccattcacgcagtgttttctcacagtgtgactctgctattcgcacacccgcgtcgttgcacttgataa |
46009496 |
T |
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| Q |
527 |
acggtcttcctgattctgatattctaaccctacctgaaacatgtga |
572 |
Q |
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| T |
46009495 |
acggtcttcctgattctgatattctaaccctacctgaaacatgtga |
46009450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 46010036 - 46009743
Alignment:
| Q |
20 |
cacattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattatttaatgtttgtt |
119 |
Q |
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| T |
46010036 |
cacattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattattta--------- |
46009946 |
T |
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| Q |
120 |
tgacttaattaatctaacgcacagtaaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgannnnnnnacaaagacc |
219 |
Q |
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| T |
46009945 |
------------tctaacgcacaataaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgatttttttacaaagacc |
46009858 |
T |
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| Q |
220 |
aatgtctttgacaccaaaccaaactaagcatatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgattaacatcacaatttctc |
319 |
Q |
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| T |
46009857 |
aatgtctttgacaccaaaccaaactaagcacatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgattaacatcacaatttctc |
46009758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 359 - 554
Target Start/End: Complemental strand, 15922298 - 15922103
Alignment:
| Q |
359 |
tagtacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaa |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| || ||||| || |
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| T |
15922298 |
tagtacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatcatgaacaagttcatcaactgaatactcattttcatccaa |
15922199 |
T |
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| Q |
459 |
ccattcacgcagtgtattctcacagtgtgactctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaac |
554 |
Q |
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| T |
15922198 |
ccattccctcagcgttttatcacactgcgactccgcgattcgcacaccggcatcattgcatttgataaacggtctgccggatttggctattctaac |
15922103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 362 - 572
Target Start/End: Complemental strand, 13114593 - 13114383
Alignment:
| Q |
362 |
tacgtaccttgacaaaaaccaaaggagaaaaagcaagatcaggaccaagcacatgatcatatacaagttcatcaatagagtactctttctcatcaaacca |
461 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | | |||| | ||| ||||| ||||||||||| |
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| T |
13114593 |
tacgtaccttgacaaaaaccaatggagaaaaagcaagatcaggaccaagcacatgatctgggacaaatccttcaacactgtattctttttcatcaaacca |
13114494 |
T |
|
| Q |
462 |
ttcacgcagtgtattctcacagtgtgactctgctattcgcacacccgcgtcgttgcacttgataaacggtcttcctgattctgatattctaaccctacct |
561 |
Q |
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|||| |||| || || ||||| ||| ||| || | || || || || |||||||||||||||||||||||||| ||||| |||||||| || |||| |
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| T |
13114493 |
ttcatgcagcgttttatcacaccgtgtctcagccacgcgtactcctgcatcgttgcacttgataaacggtcttccagattcgagtattctaatccgacct |
13114394 |
T |
|
| Q |
562 |
gaaacatgtga |
572 |
Q |
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||||||||||| |
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| T |
13114393 |
gaaacatgtga |
13114383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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