View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15765_low_4 (Length: 427)
Name: NF15765_low_4
Description: NF15765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15765_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 19283068 - 19283477
Alignment:
| Q |
1 |
atattaatttatacttgattattgttttttaaacttaatagtcttcttgcttaagaattattagataattatttctcactcaattatttatatatttcat |
100 |
Q |
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| T |
19283068 |
atattaatttatacttgattattgttttttaaacttaatagtcttcttgcttaagaattattagataattatttctcactcaattatttatatatttcat |
19283167 |
T |
|
| Q |
101 |
gtttctaaattaattgtaggccgataatttgaggcaacaaacgcttcaccaactatgtcgaatattgacggttcgtcaagcggcaagatgtttcgttgtt |
200 |
Q |
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| T |
19283168 |
gtttctaaattaattgtaggccgataatttgagacaacaaacgcttcaccaattatgtcgaatattgacggttcgtcaagcggcaagatgtttcattgtt |
19283267 |
T |
|
| Q |
201 |
attggagagtattatggacgccttcgagcccttagctctctttgggcttcaagaccacgagagtaagacctaatgccaactatgtattgagtattaaatg |
300 |
Q |
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| T |
19283268 |
attggagagtattatggacgccttcgagcccttagctctctttgggcttcaagaccacgagagtaagacctaatgccaactatgtattgagtattaaatg |
19283367 |
T |
|
| Q |
301 |
attttccctaaaaaacgattaaatgacttgatcaaaattatgaaactattatagtgtcttggtacttatattttactgagaaagtttatctatattaaaa |
400 |
Q |
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| T |
19283368 |
atttttcctaaaaaactattaaatgatttgatcaaaattatgaaactattatagtgtcttggtacttatattttactaagaaagtttatctatattaaaa |
19283467 |
T |
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| Q |
401 |
ttattattag |
410 |
Q |
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| T |
19283468 |
ttattattag |
19283477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 36337415 - 36337570
Alignment:
| Q |
112 |
aattgtaggccgataatttgaggcaacaaacgcttcaccaactatgtcgaatattgacggttcgtcaagcggcaagatgtttcgttgttattggagagta |
211 |
Q |
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||||| |||||||||| |||||||||||||| ||||||||| |||||||| || | || |||||||||| | | | | ||| ||||||||||||| || |
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| T |
36337415 |
aattgaaggccgataacttgaggcaacaaactcttcaccaattatgtcgattactcacacttcgtcaagcagtacgctcttttcttgttattggagaata |
36337514 |
T |
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| Q |
212 |
ttatggacgccttcgagcccttagctctctttgggcttcaagaccacgagagtaag |
267 |
Q |
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| T |
36337515 |
ttatggacgacttcgagctcttagttctctttgggcatcaagaccacgagagtaag |
36337570 |
T |
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