View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15765_low_5 (Length: 387)

Name: NF15765_low_5
Description: NF15765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15765_low_5
NF15765_low_5
[»] chr3 (11 HSPs)
chr3 (199-371)||(27829130-27829302)
chr3 (17-118)||(926156-926257)
chr3 (17-119)||(44702588-44702690)
chr3 (70-119)||(6460167-6460216)
chr3 (71-120)||(12264382-12264431)
chr3 (70-119)||(36076453-36076502)
chr3 (70-118)||(4584434-4584482)
chr3 (70-118)||(26948979-26949027)
chr3 (118-162)||(27829046-27829090)
chr3 (71-119)||(38653926-38653974)
chr3 (71-119)||(43363610-43363658)
[»] chr4 (6 HSPs)
chr4 (17-119)||(5454650-5454753)
chr4 (70-119)||(16904951-16905000)
chr4 (71-119)||(31965968-31966016)
chr4 (70-118)||(37590804-37590852)
chr4 (71-119)||(52434806-52434854)
chr4 (71-119)||(53143261-53143309)
[»] chr5 (8 HSPs)
chr5 (17-118)||(41391477-41391578)
chr5 (30-93)||(43026117-43026180)
chr5 (71-119)||(2398941-2398989)
chr5 (71-119)||(10729441-10729489)
chr5 (71-119)||(16526305-16526353)
chr5 (70-118)||(20655049-20655097)
chr5 (71-119)||(34107337-34107385)
chr5 (71-119)||(38246864-38246912)
[»] chr1 (6 HSPs)
chr1 (199-371)||(31902589-31902759)
chr1 (68-119)||(18855232-18855283)
chr1 (120-198)||(31902794-31902872)
chr1 (71-119)||(9216213-9216261)
chr1 (71-119)||(34888685-34888733)
chr1 (70-118)||(52687114-52687162)
[»] chr8 (7 HSPs)
chr8 (74-118)||(34815241-34815285)
chr8 (71-120)||(30473882-30473931)
chr8 (71-119)||(995814-995862)
chr8 (71-119)||(10478119-10478167)
chr8 (71-119)||(18175563-18175611)
chr8 (70-118)||(23353622-23353670)
chr8 (71-119)||(32110860-32110908)
[»] chr6 (6 HSPs)
chr6 (74-118)||(24165091-24165135)
chr6 (70-119)||(3593074-3593123)
chr6 (77-121)||(162666-162710)
chr6 (71-119)||(2266958-2267006)
chr6 (70-118)||(8539734-8539782)
chr6 (71-119)||(12597264-12597312)
[»] chr2 (6 HSPs)
chr2 (70-120)||(19596361-19596411)
chr2 (70-119)||(8700442-8700491)
chr2 (71-119)||(6120734-6120782)
chr2 (71-119)||(18351733-18351781)
chr2 (71-119)||(20545007-20545055)
chr2 (71-119)||(27944795-27944843)
[»] chr7 (7 HSPs)
chr7 (70-119)||(16376544-16376593)
chr7 (70-119)||(40969072-40969121)
chr7 (70-118)||(13786351-13786399)
chr7 (71-119)||(21804571-21804619)
chr7 (71-119)||(31373638-31373686)
chr7 (71-119)||(33916946-33916994)
chr7 (71-119)||(42242153-42242201)
[»] scaffold0031 (1 HSPs)
scaffold0031 (71-119)||(46456-46504)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 199 - 371
Target Start/End: Original strand, 27829130 - 27829302
Alignment:
Q  199 atccttcatggctccatcacaatttaatttaacagtaccactactatgaggggtccagttttgaattgatgaattagcgatgttgttattagacttagga 298  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  27829130 atccttcatggctccatcacaatttaatttgacagtaccacaactaggagggatccagctttgaattgatgaattagcgatgttgttattagacttagga 27829229  T
Q  299 atcatgagattcaattcagttcaagcctctttgatattagtgatcatatcgtgttgattctgatggtagaagt 371  Q
    |||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||||| ||||||||||||    
T  27829230 atcatgagattcaattcagtccaagcctctttgatattaatgaccatagcgtgttgattcggatggtagaagt 27829302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 926156 - 926257
Alignment:
Q  17 ctttggagtatcactttccatatgttatttgcatctataatatcaatatattgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtcta 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  926156 ctttggagtataactttccatatgttatttgcatctataatatcaatatattgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtcta 926255  T
Q  117 gt 118  Q
    ||    
T  926256 gt 926257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 44702690 - 44702588
Alignment:
Q  17 ctttggagtatcactttccatatgttatttgcatctataatatcaatatattgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtcta 116  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  44702690 ctttggagtattactttccatatattatttgcatctataatatcaatatattgcatctataatgtacatgacccgggtgttagcacgggtgaaaggtcta 44702591  T
Q  117 gtt 119  Q
    |||    
T  44702590 gtt 44702588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 6460216 - 6460167
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  6460216 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 6460167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 12264382 - 12264431
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagttg 120  Q
    ||||| ||||||||||||||| ||| ||||||||||| || |||||||||    
T  12264382 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttg 12264431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 36076502 - 36076453
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  36076502 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 36076453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 4584482 - 4584434
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  4584482 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 4584434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 26948979 - 26949027
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  26948979 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 26949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 27829046 - 27829090
Alignment:
Q  118 ttgcccaaagttcagaatatacagcaaaacattgaaccaatgtag 162  Q
    ||||| |||||||| |||||||| ||||||||| |||||||||||    
T  27829046 ttgcctaaagttcaaaatatacaacaaaacattaaaccaatgtag 27829090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 38653974 - 38653926
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  38653974 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 38653926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 43363658 - 43363610
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  43363658 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 43363610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 5454650 - 5454753
Alignment:
Q  17 ctttggagtatcactttccatatgttatttgcatctataatatcaatatattgcatctataatgta-tatgacccgggcgtcagcacgggtgaaaggtct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  5454650 ctttggagtatcactttccatatattatttgcatctataatatcaatatattgcatctataatgtattatgacccgggcggcagcacggatgaaaggtct 5454749  T
Q  116 agtt 119  Q
    ||||    
T  5454750 agtt 5454753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 16905000 - 16904951
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  16905000 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 16904951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 31966016 - 31965968
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  31966016 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 31965968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 37590852 - 37590804
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  37590852 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 37590804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 52434806 - 52434854
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  52434806 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 52434854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 53143309 - 53143261
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||||||  |||||||    
T  53143309 atctacaatgtatatgacccgtgcggcagcacgggtgaaaaatctagtt 53143261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 41391578 - 41391477
Alignment:
Q  17 ctttggagtatcactttccatatgttatttgcatctataatatcaatatattgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtcta 116  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  41391578 ctttggagcatcactttccatatattatttgcatctataatatcaatataatgcatctataatgtatatgacccgtgcgtcaacacgggtgaaaggtcta 41391479  T
Q  117 gt 118  Q
    ||    
T  41391478 gt 41391477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 43026180 - 43026117
Alignment:
Q  30 ctttccatatgttatttgcatctataatatcaatatattgcatctataatgtatatgacccggg 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43026180 ctttccatatgttatttgcatctataatatcaatatattgcatctataacgtatatgacccggg 43026117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 2398989 - 2398941
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  2398989 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 2398941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 10729489 - 10729441
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  10729489 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 10729441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 16526353 - 16526305
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  16526353 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 16526305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 20655097 - 20655049
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  20655097 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 20655049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 34107385 - 34107337
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  34107385 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 34107337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 38246912 - 38246864
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  38246912 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 38246864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 199 - 371
Target Start/End: Complemental strand, 31902759 - 31902589
Alignment:
Q  199 atccttcatggctccatcacaatttaatttaacagtaccactactatgaggggtccagttttgaattgatgaattagcgatgttgttattagacttagga 298  Q
    ||||||||  |||||||||||||||||||| ||||| ||||||||| ||||  | || ||||||||||  |||   ||| || ||||||| |||||||||    
T  31902759 atccttcactgctccatcacaatttaatttgacagttccactactaggaggtatacaattttgaattgtcgaagctgcgctgctgttatttgacttagga 31902660  T
Q  299 atcatgagattcaattcagttcaagcctctttgatattagtgatcatatcgtgttgattctgatggtagaagt 371  Q
    ||| | |||||||| ||||| |||| ||||||||||||||||| ||||  |||||||||| ||||||||||||    
T  31902659 atcctaagattcaaatcagtccaagtctctttgatattagtgaccata--gtgttgattcggatggtagaagt 31902589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 18855283 - 18855232
Alignment:
Q  68 tgcatctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  18855283 tgcatctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 18855232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 31902872 - 31902794
Alignment:
Q  120 gcccaaagttcagaatatacagcaaaacattgaaccaatgtagcagagaaaccctaatgataagtgtcagccgagtctc 198  Q
    |||||||||||||| |  ||| || |||||||| ||||| |||||||||| ||| || || |||||||||| |||||||    
T  31902872 gcccaaagttcagagtgaacaacagaacattgacccaatttagcagagaatccccaaagaaaagtgtcagctgagtctc 31902794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 9216213 - 9216261
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  9216213 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 9216261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 34888733 - 34888685
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  34888733 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 34888685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 52687162 - 52687114
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  52687162 catctacaatgtatatgacccgtgcgacagcacgggtggaaagtctagt 52687114  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 34815241 - 34815285
Alignment:
Q  74 tataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||||||||||||||| |||||||||||||||| | |||||||    
T  34815241 tataatgtatatgacccgtgcgtcagcacgggtgataagtctagt 34815285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 30473931 - 30473882
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagttg 120  Q
    ||||| ||||||||||||||| ||| ||||||||||| || |||||||||    
T  30473931 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttg 30473882  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 995862 - 995814
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  995862 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 995814  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 10478119 - 10478167
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  10478119 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 10478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 18175563 - 18175611
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  18175563 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 18175611  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 23353670 - 23353622
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  23353670 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 23353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 32110908 - 32110860
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  32110908 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 32110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 24165135 - 24165091
Alignment:
Q  74 tataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||||||||||||||| |||||||||||||||| | |||||||    
T  24165135 tataatgtatatgacccgtgcgtcagcacgggtgataagtctagt 24165091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 3593074 - 3593123
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  3593074 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 3593123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 162710 - 162666
Alignment:
Q  77 aatgtatatgacccgggcgtcagcacgggtgaaaggtctagttgc 121  Q
    ||||||||||||||| ||| ||||||||||| || ||||||||||    
T  162710 aatgtatatgacccgtgcggcagcacgggtggaaagtctagttgc 162666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 2266958 - 2267006
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  2266958 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 2267006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 8539734 - 8539782
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  8539734 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 8539782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 12597312 - 12597264
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  12597312 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 12597264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 19596411 - 19596361
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagttg 120  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||||    
T  19596411 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagttg 19596361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 8700442 - 8700491
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  8700442 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 8700491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 6120734 - 6120782
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  6120734 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 6120782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 18351733 - 18351781
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  18351733 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 18351781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 20545007 - 20545055
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  20545007 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 20545055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 27944843 - 27944795
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  27944843 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 27944795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 16376593 - 16376544
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  16376593 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 16376544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 40969072 - 40969121
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    |||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  40969072 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 40969121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 13786351 - 13786399
Alignment:
Q  70 catctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagt 118  Q
    |||||| ||||||||||||||| ||| ||||||||||| || |||||||    
T  13786351 catctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagt 13786399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 21804619 - 21804571
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  21804619 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 21804571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 31373638 - 31373686
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  31373638 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 31373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 33916994 - 33916946
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  33916994 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 33916946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 42242201 - 42242153
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  42242201 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 42242153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 46456 - 46504
Alignment:
Q  71 atctataatgtatatgacccgggcgtcagcacgggtgaaaggtctagtt 119  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||||||    
T  46456 atctacaatgtatatgacccgtgcggcagcacgggtggaaagtctagtt 46504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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