View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15765_low_6 (Length: 280)

Name: NF15765_low_6
Description: NF15765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15765_low_6
NF15765_low_6
[»] chr8 (5 HSPs)
chr8 (8-232)||(34389552-34389788)
chr8 (14-204)||(34866602-34866804)
chr8 (57-105)||(9519055-9519103)
chr8 (57-111)||(10551736-10551790)
chr8 (57-109)||(37987530-37987582)
[»] chr1 (5 HSPs)
chr1 (8-232)||(41919768-41920004)
chr1 (8-193)||(24685048-24685244)
chr1 (57-108)||(31586300-31586351)
chr1 (57-95)||(46693493-46693531)
chr1 (61-101)||(42373538-42373578)
[»] chr4 (5 HSPs)
chr4 (8-219)||(30963762-30963985)
chr4 (57-105)||(31051250-31051298)
chr4 (57-109)||(38929125-38929177)
chr4 (57-105)||(16501186-16501234)
chr4 (57-95)||(46699528-46699566)
[»] chr7 (6 HSPs)
chr7 (8-206)||(38305572-38305782)
chr7 (8-163)||(3420198-3420365)
chr7 (56-104)||(38484990-38485038)
chr7 (61-105)||(37792745-37792789)
chr7 (57-95)||(12480298-12480336)
chr7 (57-139)||(47326469-47326551)
[»] chr6 (2 HSPs)
chr6 (9-207)||(16510828-16511038)
chr6 (61-105)||(12793551-12793595)
[»] chr3 (5 HSPs)
chr3 (8-184)||(19175838-19176025)
chr3 (57-140)||(1653515-1653598)
chr3 (57-179)||(20611145-20611267)
chr3 (14-94)||(30935941-30936029)
chr3 (14-55)||(25595153-25595194)
[»] chr2 (4 HSPs)
chr2 (57-111)||(31902983-31903037)
chr2 (57-109)||(2062252-2062304)
chr2 (57-179)||(39339430-39339552)
chr2 (57-104)||(29486398-29486445)
[»] chr5 (1 HSPs)
chr5 (65-109)||(697716-697760)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 34389552 - 34389788
Alignment:
Q  8 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 96  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  34389552 acatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaag 34389651  T
Q  97 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  34389652 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaagagaaccaatggtggagcaaaaacggcagatctg 34389751  T
Q  196 aataacacttcctgaatcccgaaatcttcgacctcct 232  Q
    |||||||||||| | |||| |||| | | ||||||||    
T  34389752 aataacacttcccggatcctgaaacccttgacctcct 34389788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 34866602 - 34866804
Alignment:
Q  14 tcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaac 102  Q
    |||||||||||||||||||||||||||||||||| |||||||            ||||||||||||||||||||||||||||||||||||||| ||||||    
T  34866602 tcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaac 34866701  T
Q  103 ccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctgaataac 201  Q
    |||| |||| | || ||||  |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||| |||    
T  34866702 ccaggtcataaaaaggcggtcgcctgtgacaaggagaatgttttcgtcgccgtagtaaaagagaatcaatggtggagcaaaaatggcggatttgaacaac 34866801  T
Q  202 act 204  Q
    |||    
T  34866802 act 34866804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 9519103 - 9519055
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 105  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||    
T  9519103 acaacaaaacacgggcagcgacgctggtttgaagcgggaacacaaccca 9519055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 10551790 - 10551736
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcat 111  Q
    |||||||| ||||||||||||||||| |||||||||||| ||| |||| ||||||    
T  10551790 acaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcat 10551736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 37987530 - 37987582
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatc 109  Q
    |||||| ||||||||||||||||||||| |||||||||| | ||||| |||||    
T  37987530 acaacataacacgggcagcgacgccggtctgaagcggaaactcaacctagatc 37987582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 41920004 - 41919768
Alignment:
Q  8 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| |||||| ||||||||||||||     
T  41920004 acatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaac 41919905  T
Q  97 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcg-tgccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 195  Q
    ||||||||||||||| | |  ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  41919904 cacaacccagatcattaaatggcggcagcctgtgacaaggagaatgtgttcgttgccgtagtaaaagagaaccaatggtggagcaaaaacggcggatctg 41919805  T
Q  196 aataacacttcctgaatcccgaaatcttcgacctcct 232  Q
    || ||||||| | | ||||||||| | | ||||||||    
T  41919804 aacaacacttaccggatcccgaaacccttgacctcct 41919768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 24685048 - 24685244
Alignment:
Q  8 acatcatcaccaagaaacaagcaacaacacaaacataaatctagag-gagacaa----------caaaacacgggcagcgacgccggtttgaagcggaag 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || |||||||          ||||||||||||||||||||||||||||||| |||     
T  24685048 acatcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcagcgacgccggtttgaagcagaac 24685147  T
Q  97 cacaacccagatcatgacaaagc-ggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatc 193  Q
    ||||||||| ||||| | ||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  24685148 cacaacccatatcat-aaaaagctggccgcctgtgacaaggagaatgtgttcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaatggcggatc 24685244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 31586300 - 31586351
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagat 108  Q
    |||||||||||||||||||||||||||| |||||||| | ||| ||||||||    
T  31586300 acaacaaaacacgggcagcgacgccggtctgaagcgggaacacgacccagat 31586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 46693493 - 46693531
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaa 95  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  46693493 acaacagaacacgggcagcgacgccggtctgaagcggaa 46693531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 42373578 - 42373538
Alignment:
Q  61 caaaacacgggcagcgacgccggtttgaagcggaagcacaa 101  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  42373578 caaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 30963985 - 30963762
Alignment:
Q  8 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||            || |||||||||||||| |||||||||||||||| ||||     
T  30963985 acatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaac 30963886  T
Q  97 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 195  Q
    ||||||||||||||| | ||   ||  ||||||||||||||||||| |||||| |  |||||||||||||||||||||||||| ||||| ||| ||||||    
T  30963885 cacaacccagatcataaaaagatggtcgcctgtgacaaggagaatgcgttcgtcgttgtagtaaaagagaaccaatggtggagaaaaaacggcggatctg 30963786  T
Q  196 aataacacttcctgaatcccgaaa 219  Q
    || | ||||||||||||| |||||    
T  30963785 aacagcacttcctgaatcgcgaaa 30963762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 31051250 - 31051298
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 105  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||||    
T  31051250 acaacaaaacacgggcagcgacgccggtctgaagcggacacacaaccca 31051298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 38929177 - 38929125
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatc 109  Q
    |||||||||||||||||| ||||||||| |||||||||| ||||||| |||||    
T  38929177 acaacaaaacacgggcagtgacgccggtctgaagcggaaacacaacctagatc 38929125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 16501234 - 16501186
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 105  Q
    |||||| |||| |||||||||||||||||||||| |||| |||||||||    
T  16501234 acaacacaacatgggcagcgacgccggtttgaagtggaatcacaaccca 16501186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 46699528 - 46699566
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaa 95  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  46699528 acaacaatacacgggcagcgacgccgatttgaagcggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 38305782 - 38305572
Alignment:
Q  8 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 96  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||            |||||||||||| |||||| |||||||||||||||||||     
T  38305782 acatcctcaccaagaaacaagcaacaacacaaacatcaatctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaac 38305683  T
Q  97 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctg 195  Q
    ||||||||| |||||   || ||||| | ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||| ||| ||| ||    
T  38305682 cacaacccatatcatttaaaggcggccgactgtgacaacgagaatgcgttcgtcgccgtagtaaaagagagccaatggtggagcaaaaacggcggatatg 38305583  T
Q  196 aataacacttc 206  Q
    || | ||||||    
T  38305582 aacagcacttc 38305572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 3420198 - 3420365
Alignment:
Q  8 acatcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaag 96  Q
    ||||| |||||||||||||||||||||||||  ||||||| |||||||            ||||||||||||| ||||||||||||||| |||||||||     
T  3420198 acatcctcaccaagaaacaagcaacaacacatgcataaatttagaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaac 3420297  T
Q  97 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaaga 163  Q
    ||||||| ||||||| | || ||||   ||||| ||| |||||||| |||||| ||||||||||||||    
T  3420298 cacaacctagatcataaaaaggcggtctcctgtaacagggagaatgcgttcgtcgccgtagtaaaaga 3420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 38485038 - 38484990
Alignment:
Q  56 gacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccc 104  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38485038 gacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaaccc 38484990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 37792789 - 37792745
Alignment:
Q  61 caaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 105  Q
    |||||||||| || ||||||||||||||||||||| |||||||||    
T  37792789 caaaacacggacaacgacgccggtttgaagcggaaacacaaccca 37792745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 12480336 - 12480298
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaa 95  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  12480336 acaacaaaacacgagcagcgacgccggtttgaagtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 47326469 - 47326551
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggaga 139  Q
    |||||||||||||||||||||| ||| ||||||| | || ||||||| | |||||   || ||||| ||| ||||||||||||    
T  47326469 acaacaaaacacgggcagcgacaccgatttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 16510828 - 16511038
Alignment:
Q  9 catcatcaccaagaaacaagcaacaacacaaacataaatctagaggag-----------acaacaaaacacgggcagcgacgccggtttgaagcggaagc 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||| ||||||||||||| ||| |    
T  16510828 catcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaacaacaaaacacgggcagcgatgccggtttgaagcagaacc 16510927  T
Q  98 acaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaatggcagatctga 196  Q
    |||||||| ||||| | || || |  || ||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||| ||| | |||||    
T  16510928 acaacccatatcataaaaaggcagtcgcttgtgacaaggagaatgtgttcatctccgtagtaaaagagaaacaatggtggagcaaaaacggcggttctga 16511027  T
Q  197 ataacacttcc 207  Q
    | | |||||||    
T  16511028 acagcacttcc 16511038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 12793595 - 12793551
Alignment:
Q  61 caaaacacgggcagcgacgccggtttgaagcggaagcacaaccca 105  Q
    ||||||||||||| ||||||| |||||||||| || |||||||||    
T  12793595 caaaacacgggcaacgacgccagtttgaagcgaaaacacaaccca 12793551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 19176025 - 19175838
Alignment:
Q  8 acatcatcaccaagaaacaagcaacaacacaaacataaatctagagg-agacaa----------caaaacacgggcagcgacgccggtttgaagcggaag 96  Q
    ||||| |||||||||||||||||||| |||||||||||||||| ||| ||||||          ||||||||||||||||| |||||||||||| ||||     
T  19176025 acatcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagaggaac 19175926  T
Q  97 cacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgtagtaaaagagaaccaatggtggagcaaaaa 184  Q
    ||||||||| ||||| | || || || |||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||    
T  19175925 cacaacccatatcataaaaaggcagccgcctgtgacaaggagaatgcattcgtcgccgtagtaaaa-agaaccaatggtggagcaaaaa 19175838  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 1653515 - 1653598
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaa 140  Q
    ||||||||||||||||| |||||||||||||||||| ||  |||||||||||| | |||| |  || ||| |||||||||||||    
T  1653515 acaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaaggttgccgccagtgacaaggagaa 1653598  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 20611267 - 20611145
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgta 155  Q
    ||||||||||||| ||||||||| |||||||||| | |||||||||| | |||||   || ||||| |||  |||||||||| | | |||||| | || |    
T  20611267 acaacaaaacacgagcagcgacgtcggtttgaagtgaaagcacaaccaaaatcatagaaaggcggccgccgatgacaaggag-aggcgttcgtcggcgga 20611169  T
Q  156 gtaaaagagaaccaatggtggagc 179  Q
    ||||||||||||||||||||||||    
T  20611168 gtaaaagagaaccaatggtggagc 20611145  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 30935941 - 30936029
Alignment:
Q  14 tcaccaagaaacaagcaacaacacaaacataaatctagagga--------gacaacaaaacacgggcagcgacgccggtttgaagcgga 94  Q
    |||||||||||||  |||||||| ||||||||||||||||||         |||||||||||||| ||||||||||||| ||| |||||    
T  30935941 tcaccaagaaacagacaacaacaaaaacataaatctagaggacgaaacccaacaacaaaacacggacagcgacgccggtctgaggcgga 30936029  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 25595153 - 25595194
Alignment:
Q  14 tcaccaagaaacaagcaacaacacaaacataaatctagagga 55  Q
    ||||||||||||||||| ||||||||| | ||||||||||||    
T  25595153 tcaccaagaaacaagcagcaacacaaaaacaaatctagagga 25595194  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 31902983 - 31903037
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcat 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  31902983 acaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatcat 31903037  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 2062304 - 2062252
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatc 109  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  2062304 acaacaaaacacgggcagcgacgccggtctgaagcggaaacacaacccagatc 2062252  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 39339430 - 39339552
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacccagatcatgacaaagcggctgcctgtgacaaggagaatgtgttcgt-gccgta 155  Q
    ||||||||||||| ||||||||| |||||||||| | || ||||||| | |||||   || ||||| ||| ||||||||||||  | |||||| | || |    
T  39339430 acaacaaaacacgagcagcgacgtcggtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggagag-gcgttcgtcggcgga 39339528  T
Q  156 gtaaaagagaaccaatggtggagc 179  Q
    ||||||||||||||||||||||||    
T  39339529 gtaaaagagaaccaatggtggagc 39339552  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 29486445 - 29486398
Alignment:
Q  57 acaacaaaacacgggcagcgacgccggtttgaagcggaagcacaaccc 104  Q
    ||||||||||  |||||||||||||||| |||||||||| ||||||||    
T  29486445 acaacaaaacttgggcagcgacgccggtctgaagcggaaacacaaccc 29486398  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 697760 - 697716
Alignment:
Q  65 acacgggcagcgacgccggtttgaagcggaagcacaacccagatc 109  Q
    |||||||||||||||||||| |||||||||| | ||||| |||||    
T  697760 acacgggcagcgacgccggtctgaagcggaaactcaacctagatc 697716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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