View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15766_high_5 (Length: 367)
Name: NF15766_high_5
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 42454795 - 42454429
Alignment:
| Q |
19 |
gtatcagtgcatgatacgatatgataccggtacgtcatacattttgaagtatttgagctacaagtgtcgtctaataaacgttgcaacatcataaatgaaa |
118 |
Q |
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| T |
42454795 |
gtatcagtgcatgatacgatatgataccggtacgtcatacattttaaagtatttgagctacaagtgtcgtctaataaacgttgcaacatcataaatgaaa |
42454696 |
T |
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| Q |
119 |
atgacacaaaaaatgagacgatgaaaca--------atatttaaaataagggaatcaaaacatgatattttcgtaaacaag-----------------gg |
193 |
Q |
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| T |
42454695 |
atgacataaaaaatgagatgatgaaccagaaaaccgatatttaaaataagggaatcaaaacatgatattttcgtaaacaagatattttcgtaaacaaggg |
42454596 |
T |
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| Q |
194 |
gatcaaaatataaggtctttcagcaaaatgaagtcttgatcaaaatacatagtacattgttttagaagttgtttacttggttaatagcactacagtgcct |
293 |
Q |
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| T |
42454595 |
gatcaaaatataaggtctttcagcaaaatgaagtcttgatcaaaatacatagtatattgttttagaagttgtttacttggttaatagcactacagtgcct |
42454496 |
T |
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| Q |
294 |
taaatcc-nnnnnnnngccttgccaaaatacaaggtctttcaccaaaattccatgttcgattcatct |
359 |
Q |
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| T |
42454495 |
taaatcctttttttttgccttgccaaaatacaaggtctttcaccaaaattccatgttcgattcatct |
42454429 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 17702544 - 17702498
Alignment:
| Q |
31 |
gatacgatatgataccggtacgtcatacattttgaagtatttgagct |
77 |
Q |
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| T |
17702544 |
gatacgatatgataccgatacttcatccattttgaagtatctgagct |
17702498 |
T |
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