View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15766_high_9 (Length: 305)
Name: NF15766_high_9
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 8061154 - 8061424
Alignment:
| Q |
13 |
aagaatatgaacgttatatatacctttaacatggtgtgatctaacggtggcatgaactgcgtaaccatgttgaagaagcttcataatcagccatgatgcc |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8061154 |
aagaaaatgaacgttatatatacctttaacatggtgtgatctaacggtggcatgaactgcgtaaccatgttgaagaagcttcataatcagccatgatgcc |
8061253 |
T |
|
| Q |
113 |
acataccccgttgctcctgtcacacaaattgtacctttatcgttttccatttctctcttcctatttcaatctctatcttctctcaaggtaggaaatattt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8061254 |
acataccccgttgctcctgtcacacaaattgtacctttatcgttttccatttctctcttcctatttcaatctctatcttctctcaaggtaggaaatattt |
8061353 |
T |
|
| Q |
213 |
atacacaagttcaatacaatataatgatgttaattattagccaaattaatataattaaattgttaatgtactgatt |
288 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8061354 |
atacataagttcaatac-----aatgatgttaattattagccaaattaatataattaaattgttaatgtactgatt |
8061424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University