View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15766_low_1 (Length: 839)
Name: NF15766_low_1
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 770; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 16 - 821
Target Start/End: Complemental strand, 39840569 - 39839769
Alignment:
| Q |
16 |
ataatgtaaaggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgcca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39840569 |
ataatgtaaaggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgcca |
39840470 |
T |
|
| Q |
116 |
aagtggcacatttggttatcctatcctttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcatggattaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840469 |
aagtggcacatttggttatcctatccttttcgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcatggattaaa |
39840370 |
T |
|
| Q |
216 |
ttagctacaattgaagtgtaaggaatgaatagtgaatcaacataacataacataactaacgaacagactcaccagttggtaacagatattgactagttgc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39840369 |
ttagctacaattgaagtgtaaggaatgaatagtgaatcaacataacataac-----taacgaacagactcaccagttggtaacagatattgactagttgc |
39840275 |
T |
|
| Q |
316 |
gcttcttctgcgggagcttattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatgat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39840274 |
gcttcttctgcgggagcttattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaaccaattatgat |
39840175 |
T |
|
| Q |
416 |
agttatagaaattagacaacgataagataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagccacaattctctacagtggaaca |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840174 |
agttatagaaattagacaacgataagataagtgtgaattggggcttagggtttgttcaatttctcaaaatccctaagccacaattctctacagtggaaca |
39840075 |
T |
|
| Q |
516 |
cattattatcatcttccattaacaaacaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccagg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39840074 |
cattattatcatcttccattaacaaacaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccagg |
39839975 |
T |
|
| Q |
616 |
tggtgaccttcgagcacgaaaactcaatagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgt |
715 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839974 |
tggtgaccttcgagcacgaagactcaatagacgaagacgaaatctgctgactatttccgaggcggtaagatcagcagaagacgaagacgaaggatgatgt |
39839875 |
T |
|
| Q |
716 |
tgcattttttgaagtgcgtctgagagtttgttcaattccatttctcaaaatccctaagcgggccccaattcacagaacaggcaagaaaatgaaaattatt |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39839874 |
tgcattttttgaagtgcgtctgagagtttgttcaattccatttctcaaaatccctaagcgggccccaattcacagaacaggcaagaaaatgaaaattatt |
39839775 |
T |
|
| Q |
816 |
atgaat |
821 |
Q |
| |
|
|||||| |
|
|
| T |
39839774 |
atgaat |
39839769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 363 - 759
Target Start/End: Original strand, 44798180 - 44798584
Alignment:
| Q |
363 |
gcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatgatagttatagaaattagacaacga--taa-gataagtgtgaattggggc |
459 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| | ||| | || | || ||||||||||||||||||| |
|
|
| T |
44798180 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatgaa--ttatgatatttaaagaagaaattagtgataagtgtgaattggggc |
44798277 |
T |
|
| Q |
460 |
ttagggtttgttgaatttctcaaaatccctaag-ccacaattctctacagtggaacacattattatcatcttccattaacaaacaatattgagaatagtg |
558 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44798278 |
ttagggtttgttcaatttctcaaaatccctaagcccccaattc---acagcggaacac---attatcatcttccattaacaaacaacattgagaatagtg |
44798371 |
T |
|
| Q |
559 |
aatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcacca---ggtggtgaccttcgagcacgaaaactcaatagacgaagacga |
655 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44798372 |
aatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaagactcaatagacgaagacga |
44798471 |
T |
|
| Q |
656 |
aatctgctgactatttcc---gaggcggtaagatcagca------gaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgt |
746 |
Q |
| |
|
|||||||||||||||||| | || |||| || ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
44798472 |
aatctgctgactatttccaagggggtggtaggagcagcagaagacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgt |
44798571 |
T |
|
| Q |
747 |
tcaattccatttc |
759 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44798572 |
tcaattccatttc |
44798584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 441 - 707
Target Start/End: Complemental strand, 35161852 - 35161583
Alignment:
| Q |
441 |
gataagtgtgaattggggcttagggtttgttgaatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaacaa |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
35161852 |
gataagtgtgaattggggcttagggtttgttcaattactcaaaatccctaagccccaattctctaaagtggaacacattat---catcttccattaacaa |
35161756 |
T |
|
| Q |
541 |
acaatattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggt---ggtgaccttcgagcacgaaaa |
637 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
35161755 |
acaacattgagaatagtgaatgaaacataacgaacgaacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaaga |
35161656 |
T |
|
| Q |
638 |
ctcaatagacgaagacgaaatctgctgactatttccga---ggcggtaagatcagcagaagacgaagacgaag |
707 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||| |
|
|
| T |
35161655 |
ctcaatacacgaagacgaaatctgctgactatttccgagggggtggtaggagcagcagaagacgaagacgaag |
35161583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 44630826 - 44631029
Alignment:
| Q |
26 |
ggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtggcaca |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44630826 |
ggaaaccattaaccatttgcgaaataaactcatcattaacgaccaattggtagtggttctgagtttgtgaattataatcccgtattgccaaagtggcaca |
44630925 |
T |
|
| Q |
126 |
tttggttatcctatcctttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcat---ggattaaattagcta |
222 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
44630926 |
tttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagagaaaggaaaaattaatcatagatgattaaattagcta |
44631025 |
T |
|
| Q |
223 |
caat |
226 |
Q |
| |
|
|||| |
|
|
| T |
44631026 |
caat |
44631029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 35162313 - 35162105
Alignment:
| Q |
21 |
gtaaaggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtg |
120 |
Q |
| |
|
|||||||||||||||||| | ||| ||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35162313 |
gtaaaggaaaccattaacaaattgtgaagtaaacgtatcaacaacgaccaattggtagtcgttctgagtttgtgaattataatcccgtattgccaaagtg |
35162214 |
T |
|
| Q |
121 |
gcacatttggttatcctatcctttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcat---ggattaaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
35162213 |
gcacatttggttatcctatcctttttggtaggatctttgatatcattaaaatctgatagaaaagtagagaaaggaaaaattaatcatcgatgattaaatt |
35162114 |
T |
|
| Q |
218 |
agctacaat |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
35162113 |
agctacaat |
35162105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 44797801 - 44798009
Alignment:
| Q |
21 |
gtaaaggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtg |
120 |
Q |
| |
|
|||||||||||| ||||| | ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44797801 |
gtaaaggaaaccgttaacatatcgcgaagtaaacgtatcaacaacgaccaattggtagtggttctgagtttgtgaattataatcccgtattgccaaagtg |
44797900 |
T |
|
| Q |
121 |
gcacatttggttatcctatcctttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcat---ggattaaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
44797901 |
gcacatttggttatcctatcctttttggtaggatctttgatctcattaaaatctgatagaaaagtagagaaaggaaaaattaatcatagatgattaaatt |
44798000 |
T |
|
| Q |
218 |
agctacaat |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
44798001 |
agctacaat |
44798009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 39845528 - 39845311
Alignment:
| Q |
21 |
gtaaaggaaaccattaaccatttgcgaaataaactcatcaataacgaccaattggtagtggttctgagtttgtgaattataatcttgtattgccaaagtg |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
39845528 |
gtaaaggaaacaattaaccatttgcgaaataaactcatcattaacgaccaattggtagtcgttccgagtttgtgaattataatcccgtattgccaaagtg |
39845429 |
T |
|
| Q |
121 |
gcacatttggttatcctatcc------------tttttgataggatctttgatctcattaaaatctgatagaaaagtagagaaaggaacaattaatcatg |
208 |
Q |
| |
|
|||||||| | | ||||||| |||| ||| ||| || ||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39845428 |
acacatttgataagcctatccttttcgatttgattttcgattcgattttcgatttgattaaaatctgatagaaaagtagagaaaggaacaattaatcatc |
39845329 |
T |
|
| Q |
209 |
gattaaattagctacaat |
226 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
39845328 |
gattaaattaactacaat |
39845311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 583 - 757
Target Start/End: Complemental strand, 39844923 - 39844740
Alignment:
| Q |
583 |
agaacaatataaatgttaaactcactcaccaggtggtg---accttcgagca------cgaaaactcaatagacgaagacgaaatctgctgactatttcc |
673 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||| | || || ||||||||||||| ||||||||||||||||| |
|
|
| T |
39844923 |
agaataatataaatgttaaactcactcaccaggtggtggtgaccttcgagcaaatggaccaagacgagatagacgaagacggtatctgctgactatttcc |
39844824 |
T |
|
| Q |
674 |
gaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatt |
757 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
39844823 |
gagtcggtaagatcagcaaaagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt |
39844740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 39845143 - 39845046
Alignment:
| Q |
331 |
gcttattctgcggggtttcagaggagcagcgggcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatgatagttatagaaattag |
430 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39845143 |
gcttcttctgcggggtttcagaggagcagcaggcattttttgatgtacgtctgaaaga--ataagaaagaagaagcaattatgatagttatagaaattag |
39845046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 473 - 537
Target Start/End: Complemental strand, 39845024 - 39844963
Alignment:
| Q |
473 |
aatttctcaaaatccctaagccacaattctctacagtggaacacattattatcatcttccattaa |
537 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39845024 |
aatttctcaaaatccctaagccccaattctctacagtggaacaca---ttatcatcttccattaa |
39844963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 44631200 - 44631251
Alignment:
| Q |
363 |
gcattttttgacgtacgtctgagagagaataagaaagaagaagcaattatga |
414 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44631200 |
gcattttttgatgtacgtctgagagagaataataaagaagaagcaattatga |
44631251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 35161925 - 35161887
Alignment:
| Q |
363 |
gcattttttgacgtacgtctgagagagaataagaaagaa |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
35161925 |
gcattttttgacatacgtctgagagagaataataaagaa |
35161887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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