View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15766_low_13 (Length: 305)

Name: NF15766_low_13
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15766_low_13
NF15766_low_13
[»] chr2 (3 HSPs)
chr2 (134-240)||(20968791-20968900)
chr2 (27-119)||(20969399-20969491)
chr2 (146-233)||(20981628-20981716)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 20968900 - 20968791
Alignment:
Q  134 acttcaattacttatagtgttggagactcgcttgctttacacaaacaaga---gttcatagttataaaacaaaacaactatcaagcagtgagttgcttca 230  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  20968900 acttcatttacttatagtgttggagactcgcttgctttacacaaacaagatcagttcatagttataaaacaaaacaactatcaagcagtgagttgcttca 20968801  T
Q  231 aatgttatct 240  Q
    ||||||||||    
T  20968800 aatgttatct 20968791  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 27 - 119
Target Start/End: Complemental strand, 20969491 - 20969399
Alignment:
Q  27 acggtgccagcaggcttactccttgcttgtgactgcaataaggcaggaaaccggcactgagatatcagcaatgaatgattcatcctgaaaatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  20969491 acggtgccagcaggcttactccttgcttgtgactgcaataaggcaggaaaccggcaccaagatatcagcaatgaatgattcatcctgaaaatt 20969399  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 20981716 - 20981628
Alignment:
Q  146 tatagtgttggagactcgcttgctttacacaaa-caagagttcatagttataaaacaaaacaactatcaagcagtgagttgcttcaaat 233  Q
    ||||| ||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20981716 tatagagttggagactttcttgctttacacaaaacaagagttcatagttataaaacaaaacaactatcaagcaatgagttgcttcaaat 20981628  T

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