View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15766_low_20 (Length: 216)
Name: NF15766_low_20
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 38627174 - 38626959
Alignment:
| Q |
1 |
tcttgaaaatttggttttctcagtgttagaatttggtctagataacaaaataaacataattagcgtggaatagtgttatattctttgtattatcaattta |
100 |
Q |
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| T |
38627174 |
tcttgaaaatttggttttctcagtgttagaatttggtctagataacaaaataaacataattagcgtggaatagtgttatattctttgtattatcaattta |
38627075 |
T |
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| Q |
101 |
gcgtaggaaaacactaattcgtatgctcagcaaaattagataaaaataaagttatgttttttaaataaggtaatactgtgtctaattctcttgaggtaaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38627074 |
gcgtaggaaaaaactaattcgtatgctcagcaaaattagataaaaataaagtaatgttttttatttaaggtaatactgtgtctaattctcttgaggtaaa |
38626975 |
T |
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| Q |
201 |
ataagataatctcatt |
216 |
Q |
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|||||||||| ||||| |
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| T |
38626974 |
ataagataatttcatt |
38626959 |
T |
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