View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15766_low_3 (Length: 589)
Name: NF15766_low_3
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Complemental strand, 13114671 - 13114094
Alignment:
| Q |
1 |
atacaccaagaacaaacacaggtttttattgtcaacttgtaatttgaaaagctcttaaaatacagatacaccatatttatctatctactttaagaaaagt |
100 |
Q |
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| T |
13114671 |
atacaccaagaacaaacacaggtttttattgtcaacttgtaatttgaaaagctcttaaaatacagatacaccatatttatctatctactttaagaaaagt |
13114572 |
T |
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| Q |
101 |
tttcttataataacatgtgatacattttcgcatgtctttttctaccttgtgctgccctagattcgtgcaaagagcacgatatttttactatagcctataa |
200 |
Q |
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| T |
13114571 |
tttcttataataacatgtgatacattttcgcatgtctttttctaccttgt-ctgccctagattcgtgcaaagagcacgatatttttactatagcctataa |
13114473 |
T |
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| Q |
201 |
aacaagtcgtcaacaacaaccaagttttatctaacaaaataagactggctatatatcgaacgacactaatgttttgtcataatactagtctataataaaa |
300 |
Q |
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| T |
13114472 |
aataagtcgtcaacaacaaccaagttttatctaacaaaataagactggctatgcatcgaacgacactaatgttttgtcataatactagtc---------- |
13114383 |
T |
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| Q |
301 |
gtgcttaaaatatatacaacatgcataatgaactatatttaaggcaacatcaattattcatgactaaagttttactcttccttttgagtgagctttcaag |
400 |
Q |
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| T |
13114382 |
gtgcttaaaatatatacaacatgcataataaactatatttaaggcaacatcaattattcatgactaaagttttactcttccttttgagtgagctttcaag |
13114283 |
T |
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| Q |
401 |
tcttcaaagtcgattgctcattcgccccgttcgagttgccgttgttctgccctaatttattgaacatgtgcctccaactcctattggagctgtagtagct |
500 |
Q |
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| T |
13114282 |
tcttcaaagtcgattgttcattcgccccgttcgagttgccgttgttctgccctaatttattgaacatttgcctccaactcctattggagctgtagtagct |
13114183 |
T |
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| Q |
501 |
attatatcgattccttcccggtaaaggaattaaggaacttggtggcattcttggatgagtagttttttgtgtttcaccatcaccaattt |
589 |
Q |
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| T |
13114182 |
attatatcgattccttcccggtaaaggaattaaggaacttggtggcattcttggatgagtagttttttgtgtttcaccatcaccaattt |
13114094 |
T |
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