View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15766_low_4 (Length: 515)
Name: NF15766_low_4
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 21 - 495
Target Start/End: Original strand, 22204136 - 22204609
Alignment:
| Q |
21 |
ttggtattaaatggataccaaaccattttacattcagctcacttttattaaaattaattttacaaaatcaaccttctatttcaagtgcacaa-ggcaagt |
119 |
Q |
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| T |
22204136 |
ttggtattaaatggataccaaaccattttccattcagctcacttttattaaacttaattttacaaaatcaaccttcaatttcaagtgcacaaaggcaagt |
22204235 |
T |
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| Q |
120 |
tatgttgtttaggatgaaaagtggaacaatgacatgactaaaagaaaactagtcattggtgaaaactaaaatgattcaaatcaatcaattttcactagca |
219 |
Q |
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| T |
22204236 |
tatgttgtttaggatgaaaagtggaacaatgacatgactaaaagaaaactagtcattggtgaaaactagaatgattcaaatcaatcaattttcactagca |
22204335 |
T |
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| Q |
220 |
tcaatggtatttgagtgtttcaccatatatgtatccaacctccatctaaatttggaannnnnnnnccccttcaccatttccattattaccatgagaataa |
319 |
Q |
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| T |
22204336 |
tcaatggtatttgagtgtttcaccatatatgtatccaacctccatctgaatttggtattttttttccccttcaccatttccattattaccatgagaataa |
22204435 |
T |
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| Q |
320 |
gaatttcacacctcacaaagacttcaccnnnnnnnnnnntcatgcatatcactctcatatttattattgacttgtatttagttctggtcccccctctgct |
419 |
Q |
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| T |
22204436 |
gaatttcacacctcacaaagacttcac--aaaaaaaaaaccatgcatatcactctcatatttattattgacttgtatttagttctggtcccccctctgct |
22204533 |
T |
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| Q |
420 |
catccatttattcttcccttattaatttgttatgcaagccaattagcagtgatatgatatgatatacactatgaag |
495 |
Q |
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| T |
22204534 |
cttccatttattcttcccctattaatttgttatgcaagccaattagcactgatatgatatgatatatattatgaag |
22204609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 18325371 - 18325323
Alignment:
| Q |
40 |
aaaccattttacattcagctcacttttat-taaaattaattttacaaaa |
87 |
Q |
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| T |
18325371 |
aaaccattttacattcaactcacttttatgtaaaatcaattttacaaaa |
18325323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 34943435 - 34943483
Alignment:
| Q |
44 |
cattttacattcagctcacttttat-taaaattaattttacaaaatcaa |
91 |
Q |
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| T |
34943435 |
cattttacattcaactcaattttatctaaaattaattttataaaatcaa |
34943483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 48575487 - 48575539
Alignment:
| Q |
40 |
aaaccattttacattcagctcacttttat-taaaattaattttacaaaatcaa |
91 |
Q |
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| T |
48575487 |
aaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaa |
48575539 |
T |
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