View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15766_low_5 (Length: 490)
Name: NF15766_low_5
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 25 - 468
Target Start/End: Complemental strand, 38287745 - 38287301
Alignment:
| Q |
25 |
catgtccaagaaaatatgtaagtcgttttttccagtaacaaattttgcattcctaatcaagcaatagaactcaagtggttaatgaatttcagcaaagacg |
124 |
Q |
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| T |
38287745 |
catgtccaagttaatatgtaagtcgttttttctagtaacaaattttgcattcctaatcaagcaatagaactcaagtggttaatgagtttcagcaatgacg |
38287646 |
T |
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| Q |
125 |
aatcgttcgaaagaatccgaattcgattcctaagttaaacaattattggttagattatccttgcctgatgaccgaacctctttttcctgagaaaccagag |
224 |
Q |
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| T |
38287645 |
aatcgtttggaagaatccgaattcgattcttaagttaaacaattattgattagattatccttgtctgatgaccgaacctcttttttctgagaaaccagag |
38287546 |
T |
|
| Q |
225 |
ggttaacacnnnnnnntattgcattcttaatttacgagtatattttctcctgacatgaatgtgtgtgtatttgtgtgtctatatatgtattaaggaaaat |
324 |
Q |
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| T |
38287545 |
ggttaacac-aaaaaatattgcattcttaatttacgagtatattttctcctg-catgaatgtgtgtttatttgtgtgtctatatacgtattaaggaaaat |
38287448 |
T |
|
| Q |
325 |
ggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtgatatcatacgcacagac---nnnnnnnnggaaagccaaatcccatat |
421 |
Q |
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| T |
38287447 |
ggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaagtgatatcatacgcacagacaaaaaaaaaaaggaaagccaaatcccatat |
38287348 |
T |
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| Q |
422 |
ctaagcaataatcaaccgggttcacatatcactaattaattatagac |
468 |
Q |
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| T |
38287347 |
ctaagcaataatcaaccgggttcacatatcactaattaatcatagac |
38287301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 39843995 - 39844041
Alignment:
| Q |
94 |
ctcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaat |
140 |
Q |
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| T |
39843995 |
ctcaagtggtaaatgaacttcaccaaagacgaatcattcgaaagaat |
39844041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 13043549 - 13043501
Alignment:
| Q |
82 |
caagcaatagaactcaagtggttaatgaatttcagcaaagacgaatcgt |
130 |
Q |
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| T |
13043549 |
caagcaattgagctcaagtggttaatgagtttcatcaaggacgaatcgt |
13043501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 34548528 - 34548585
Alignment:
| Q |
95 |
tcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaatccgaattcgatt |
152 |
Q |
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| T |
34548528 |
tcaagtgattaatgaacttcatcaaagacgagtcgttcggaataacccgaattcgatt |
34548585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 24363805 - 24363853
Alignment:
| Q |
94 |
ctcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaatcc |
142 |
Q |
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| T |
24363805 |
ctcaagtggttaattaatttcaccaaggacgaatcgtttggaagaatcc |
24363853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 8509644 - 8509732
Alignment:
| Q |
84 |
agcaatagaactcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaatccgaattcgattcctaagttaaacaattattg |
172 |
Q |
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|||||| |||||||||| |||||||| ||||| ||| || |||| ||| | ||||||| |||||||||| || | |||||||||||| |
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| T |
8509644 |
agcaatcgaactcaagtagttaatgagtttcatcaatgatgaattgtttgggagaatccaaattcgattcttagataaaacaattattg |
8509732 |
T |
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