View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15766_low_9 (Length: 366)
Name: NF15766_low_9
Description: NF15766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15766_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 17538210 - 17538484
Alignment:
| Q |
11 |
caaaggcattaatctttcttatactgaaagtaattttgatgatcaaactggcacttcaaaaattttaagaaggatgcatgttcaacaagaaacaaaaata |
110 |
Q |
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| T |
17538210 |
caaaggcattaatctttctaatactgaaagtaattttgatgatcaaactggcacttcaaagattttaagaaggatgcatgttcaacaggaagcaaaatta |
17538309 |
T |
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| Q |
111 |
ttagttgatcttgctgaagactcggatgagatatataagtttgttatgtctgaattgagaaatactcgtatgtcagctattgcaatgaagaaatcaaatt |
210 |
Q |
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| T |
17538310 |
ttagttgatcttgctaaagactcggatgagatatatacgttcgttatgtctgaattgagtcagactcgtatgtcagctattgcaatgaagaaatcaaatt |
17538409 |
T |
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| Q |
211 |
tacctgttggtgatggaatttctcctttggaatctagccaggatgtcaatcaaatttatttgtcagaggaagaaa |
285 |
Q |
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| T |
17538410 |
tacctatcggcgatggaatttctcctttggaatctagccaggatgtcaatgaaatttattcgtcagaggaagaaa |
17538484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 39 - 351
Target Start/End: Complemental strand, 13222725 - 13222416
Alignment:
| Q |
39 |
agtaattttgatgatcaaactggcacttcaaaaattttaagaaggatgcatgttcaacaagaaacaaaaatattagttgatcttgctgaagactcggatg |
138 |
Q |
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| T |
13222725 |
agtaattttgatggtcaaaatagcacaccaaagatattaagaaggatgcatgctcaacaagaagcaaaggtattacttgatttggctgaagagtctgatg |
13222626 |
T |
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| Q |
139 |
agatatataagtttgttatgtctgaattgagaaatactcgtatgtcagctattgcaatgaagaaatcaaatttacctgttggtgatggaatttctccttt |
238 |
Q |
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| T |
13222625 |
agatatacaaattcattatatctgatttgaggcgcactcgtatgtcagccattgcaatgaagaaatcaaatttaggtatcagtgatggagtttctccttt |
13222526 |
T |
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| Q |
239 |
ggaatctagccaggatgtcaatcaaatttatttgtcagaggaagaaagtaaacagccagaactcactattggaaacccacgccaagcacaaaccaaagga |
338 |
Q |
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| T |
13222525 |
ggaatctagccaaaatgtcaaccaaaattgcttgtcggaggaagaaagtgaa---ctagaattgactattagaaatccacgcaatgcacaaacaaaaggg |
13222429 |
T |
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| Q |
339 |
agaaagaaggatg |
351 |
Q |
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| T |
13222428 |
agaaagaaggatg |
13222416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 17538487 - 17538551
Alignment:
| Q |
262 |
aaatttatttgtcagaggaagaaagtaaacagccagaactcactattggaaacccacgccaagca |
326 |
Q |
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| T |
17538487 |
aaatttattcgtcagaggaagaaagtgaaccgccagaattgactattggaaacccacgccaagca |
17538551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 39 - 351
Target Start/End: Complemental strand, 15271553 - 15271244
Alignment:
| Q |
39 |
agtaattttgatgatcaaactggcacttcaaaaattttaagaaggatgcatgttcaacaagaaacaaaaatattagttgatcttgctgaagactcggatg |
138 |
Q |
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||||||||||||| ||||| | |||| |||| || |||||||||||||||| |||||||||| |||| ||||| ||||| | |||||||| || |||| |
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| T |
15271553 |
agtaattttgatggtcaaaatagcacaccaaagatattaagaaggatgcatgctcaacaagaagcaaaggtattacttgatttggctgaagagtctgatg |
15271454 |
T |
|
| Q |
139 |
agatatataagtttgttatgtctgaattgagaaatactcgtatgtcagctattgcaatgaagaaatcaaatttacctgttggtgatggaatttctccttt |
238 |
Q |
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| T |
15271453 |
agatatacaaattcattatatctgatttgaggcgcactcgtatgtcagccattgcaatgaagaaatcaaatttaggtatcagtgatggagtttctccttt |
15271354 |
T |
|
| Q |
239 |
ggaatctagccaggatgtcaatcaaatttatttgtcagaggaagaaagtaaacagccagaactcactattggaaacccacgccaagcacaaaccaaagga |
338 |
Q |
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|||||||||||| ||||||| |||| || ||||| |||||||||||| || |||||| | |||||| |||| |||||| | |||||||| ||||| |
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| T |
15271353 |
ggaatctagccaaaatgtcaaccaaaattgcttgtcggaggaagaaagtgaa---ccagaattgactattagaaatccacgcaatgcacaaacaaaaggg |
15271257 |
T |
|
| Q |
339 |
agaaagaaggatg |
351 |
Q |
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| T |
15271256 |
agaaagaaggatg |
15271244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 39 - 351
Target Start/End: Original strand, 40875473 - 40875782
Alignment:
| Q |
39 |
agtaattttgatgatcaaactggcacttcaaaaattttaagaaggatgcatgttcaacaagaaacaaaaatattagttgatcttgctgaagactcggatg |
138 |
Q |
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||||||||||||| ||||| | |||| |||| || |||||||||||||||| |||||||||| |||| ||||| ||||| | |||||||| || |||| |
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| T |
40875473 |
agtaattttgatggtcaaaatagcacaccaaagatattaagaaggatgcatgctcaacaagaagcaaaggtattacttgatttggctgaagagtctgatg |
40875572 |
T |
|
| Q |
139 |
agatatataagtttgttatgtctgaattgagaaatactcgtatgtcagctattgcaatgaagaaatcaaatttacctgttggtgatggaatttctccttt |
238 |
Q |
| |
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||||||| || || |||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||| | | |||||||| |||||||||| |
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| T |
40875573 |
agatatacaaattcattatatctgatttgaggcgcactcgtatgtcagccattgcaatgaagaaatcaaatttaggtatcagtgatggagtttctccttt |
40875672 |
T |
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| Q |
239 |
ggaatctagccaggatgtcaatcaaatttatttgtcagaggaagaaagtaaacagccagaactcactattggaaacccacgccaagcacaaaccaaagga |
338 |
Q |
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|||||||||||| ||||||| |||| || ||||| |||||||||||| || |||||| | |||||| |||| |||||| | |||||||| ||||| |
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| T |
40875673 |
ggaatctagccaaaatgtcaaccaaaattgcttgtcggaggaagaaagtgaa---ccagaattgactattagaaatccacgcaatgcacaaacaaaaggg |
40875769 |
T |
|
| Q |
339 |
agaaagaaggatg |
351 |
Q |
| |
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||||||||||||| |
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| T |
40875770 |
agaaagaaggatg |
40875782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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