View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15767_high_13 (Length: 227)
Name: NF15767_high_13
Description: NF15767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15767_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 40616506 - 40616725
Alignment:
| Q |
7 |
agaaggcagttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttcttta |
106 |
Q |
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| T |
40616506 |
agaaggcagttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttcttta |
40616605 |
T |
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| Q |
107 |
agatactccatcttgctgatggaacaaccatcaaaaccaaggtaaacaatattatatgtgacatagtaacatatacaatattcttttttgtattttgttc |
206 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
40616606 |
agatactccatcttgccgatggaacaaccatcaaaaccaaggtaaacaatattatgtgtgacatagtaacatatacaatattctttgttgtattttgtgc |
40616705 |
T |
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| Q |
207 |
tcacaaatatcacatagtat |
226 |
Q |
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|||||||||||||||||||| |
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| T |
40616706 |
tcacaaatatcacatagtat |
40616725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 51035716 - 51035581
Alignment:
| Q |
16 |
ttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttctttaagatactcc |
115 |
Q |
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|||||||||||||||||||| | ||| ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||| || | ||||||||||| |
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| T |
51035716 |
ttattgttggaagcccttgccaatgaacttcctagtggcaccattagatacatgtcaaaggttgttgctattcaagaatctggcttgtctaagatactcc |
51035617 |
T |
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| Q |
116 |
atcttgctgatggaacaaccatcaaaaccaaggtaa |
151 |
Q |
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| T |
51035616 |
atcttgctgatggaacaaccatcaaaactaaggtaa |
51035581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 51031525 - 51031390
Alignment:
| Q |
16 |
ttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttctttaagatactcc |
115 |
Q |
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|||||||||||||||||||| | ||| ||||| | |||||| ||||||||| |||||||||||||||||||| ||||||||||||| | || ||||| | |
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| T |
51031525 |
ttattgttggaagcccttgccaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggtttttccaaaatactac |
51031426 |
T |
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| Q |
116 |
atcttgctgatggaacaaccatcaaaaccaaggtaa |
151 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
51031425 |
atcttgttgatggaacaaccatcaaaaccaaggtaa |
51031390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 51064273 - 51064138
Alignment:
| Q |
16 |
ttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttctttaagatactcc |
115 |
Q |
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|||||||||||||||||||| | ||| ||||| | |||||| ||||||||| |||||||||||||||||||| ||||||||||||| | || ||||| | |
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| T |
51064273 |
ttattgttggaagcccttgcaaatgaacttcccaatggcaccattaggtacatgtcaaaggttgttgctattgaggaatctggtttttccaaaatactac |
51064174 |
T |
|
| Q |
116 |
atcttgctgatggaacaaccatcaaaaccaaggtaa |
151 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
51064173 |
atcttgttgatggaacaaccatcaaaaccaaggtaa |
51064138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 51069678 - 51069534
Alignment:
| Q |
14 |
agttattgttggaagcccttgctagtgagcttccaagtggcactattaggtacttgtcaaaggttgttgctattcaggaatctggtttctttaagatact |
113 |
Q |
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||||||||||||||||||||| | ||| ||||||| | |||| ||||||||| ||||||| || |||||||| |||||||||| |||||||| ||||| |
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| T |
51069678 |
agttattgttggaagcccttggcaatgaacttccaaatagcaccattaggtacatgtcaaaagtcgttgctatagaggaatctggattctttaaaatact |
51069579 |
T |
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| Q |
114 |
ccatcttgctgatggaacaaccatcaaaaccaaggtaaacaatat |
158 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
51069578 |
acatcttgttgatggaacaaccatcaaaacaaaggtaaacaatat |
51069534 |
T |
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