View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15767_high_14 (Length: 220)
Name: NF15767_high_14
Description: NF15767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15767_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 18719126 - 18719274
Alignment:
| Q |
11 |
aagaatattggttatcaaatggagtggccatccagtcaagcttcttgctggccatgggtgtcgtggaacatcgtttgttgtagaggtgtattgaaagctg |
110 |
Q |
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| T |
18719126 |
aagaatattggttatcaaatggagtggccatccagtcaagcttcttgctggccatgggtgtcgtggaacatcgtttgttgtagaggtgtattgaaagctg |
18719225 |
T |
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| Q |
111 |
atttaattgtggcgcggataagtccattgagcatgaaaatagatgtgca |
159 |
Q |
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| T |
18719226 |
atttaattgcggcgcggataagtccattgagcatgaaaatagatgtgca |
18719274 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 39858948 - 39859004
Alignment:
| Q |
91 |
tagaggtgtattgaaagctgatttaattgtggcgcggataagtccattgagcatgaa |
147 |
Q |
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| T |
39858948 |
tagaggagtgttgaaggctgatttaattgcggcgcggataagtccattgagcatgaa |
39859004 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 39451051 - 39450995
Alignment:
| Q |
147 |
aaatagatgtgcacagagaccttcctgatctttctgcagatgttatatcaaggactg |
203 |
Q |
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| T |
39451051 |
aaatagatgtccatagagaccttcatgaactttctgcagatgttatatcaagaactg |
39450995 |
T |
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