View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15767_high_3 (Length: 472)
Name: NF15767_high_3
Description: NF15767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15767_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 2281039 - 2280581
Alignment:
| Q |
1 |
aggtatagcatttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaattgctccaa- |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2281039 |
aggtatagcatttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaattgctccaac |
2280940 |
T |
|
| Q |
100 |
--aggctcccatgtagacaactttctagaattagctcctaccggcaaccccaaatatttgaaaggaatggatccctcactacaatgtaaaaaatgacacg |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2280939 |
aaaggctcccatgtagacaactttctagaattagctcctaccggcaaccccaaatatttgaaaggaatggatccctcactacaatgtaaaaaatgacacg |
2280840 |
T |
|
| Q |
198 |
ccgcttccataaaatctctaataacattgatgccatcaacgaacttttgtgatagttgattttcaaccccgacgataaatcccactgtcacttcctccat |
297 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2280839 |
ctgcttccataaaatctctaataacattgatgccatcaacgaacttttgtgataattgattttcaaccccgacgataaatcccactgtcacttcctccat |
2280740 |
T |
|
| Q |
298 |
gccggattcatcaaaaaatgaatgaatgaatatgggtttaactaataaattcttcatctagcttagtcaatcagtcattccttttgatttgctccatttg |
397 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2280739 |
gccgaattcatcaaaaaatgaatgaatgaatatgggtttaactaataaattcttcatctaacttagtcaatcagtcattccttttgatttgctctatttg |
2280640 |
T |
|
| Q |
398 |
tcttcccaatcttcttgtcaaagagtagtttcgtacttgctcccttacaacgcataaac |
456 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2280639 |
tcttcccaatcttcttgtcaaagagtagtttcgtacttgctcccttacaacgcataaac |
2280581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 50435662 - 50435392
Alignment:
| Q |
5 |
atagcatttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaattgctccaa---ag |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||| || ||||| ||| | |||||| | || || ||||||||||||||||| ||||| || |
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| T |
50435662 |
atagcatttagaacggaattcaagagaacaattctacctccgagactcacatacatgttcccctacgaattgagtcttttcttcaattggtccaacatag |
50435563 |
T |
|
| Q |
102 |
gctcccatgtagacaactttctagaattagctcctaccggcaaccccaaatatttgaaaggaatggatccctcactacaatgtaaaaaatgacacgccgc |
201 |
Q |
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||||||| || ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |
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| T |
50435562 |
gctcccaagttgacaactttctaggattgacacctaccggcaaccccaaatatttgaaaggaatggaaccctctctacaatgtaaaaagtgacacgccgc |
50435463 |
T |
|
| Q |
202 |
ttccataaaatctctaataacattgatgcc-atcaacgaacttttgtgatagttgattttcaaccccgacg |
271 |
Q |
| |
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|||||||||||||||| | |||||||| || ||||| || ||||||||||| || || ||||||||||||| |
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| T |
50435462 |
ttccataaaatctctatttacattgatcccaatcaaagagcttttgtgataattaatcttcaaccccgacg |
50435392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 42112348 - 42112397
Alignment:
| Q |
41 |
cctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaa |
90 |
Q |
| |
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|||||||| ||||| |||||||| |||||||| ||||| ||||||||||| |
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|
| T |
42112348 |
cctccaagactcacatacttatttccccaagaattaagccttttcttcaa |
42112397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 32775401 - 32775663
Alignment:
| Q |
11 |
tttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaattgctccaa---aggctccc |
107 |
Q |
| |
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||||||| ||||||||| ||||||||| |||||| || ||||| || ||||| ||||| || || |||| |||||||||||| ||||| |||||||| |
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| T |
32775401 |
tttaaaatggaattcaaaagaacaattatacctcctagactcacatatttatttccccatgaattgagtcgtttcttcaattgatccaacaaaggctccc |
32775500 |
T |
|
| Q |
108 |
atgtagacaactttctagaattagctcctaccggcaaccccaaatatttgaaaggaatggatccctcactacaatgtaaaaaatgacacgccgcttccat |
207 |
Q |
| |
|
| || |||||||| || ||||| ||||||||||||||||||||||||||||||||||| | | |||| ||||||||| || | |||||||| ||||| |
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| T |
32775501 |
aagttgacaacttccttgaattggctcctaccggcaaccccaaatatttgaaaggaattgcttcctcttgacaatgtaagaatcggcacgccgcctccat |
32775600 |
T |
|
| Q |
208 |
aaaatctctaataacattgatgcc-atcaacgaacttttgtgatagttgattttcaaccccga |
269 |
Q |
| |
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||| |||||| |||| ||||| || || ||||||| ||| || |||| | |||||||||||| |
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|
| T |
32775601 |
aaagtctctattaacgttgataccaattaacgaacatttatggaagttaactttcaaccccga |
32775663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 36987870 - 36987706
Alignment:
| Q |
1 |
aggtatagcatttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaattgctccaa- |
99 |
Q |
| |
|
|||||| |||||||||||||| || || || ||||||| ||||||||| ||||| || ||||| ||||| || || ||| | ||||||||||| ||||| |
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|
| T |
36987870 |
aggtattgcatttaaaacggagtttaaaagcacaattctacctccaagactcacatatttatttccccatgaatttagtttattcttcaattgatccaac |
36987771 |
T |
|
| Q |
100 |
--aggctcccatgtagacaactttctagaattagctcctaccggcaaccccaaatatttgaaagg |
162 |
Q |
| |
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| ||||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |
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| T |
36987770 |
ataagctcccaagtagacaacttcctagaattagctccaaccggcaaacccaagtatttgaaagg |
36987706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 3679573 - 3679617
Alignment:
| Q |
40 |
acctccaaggctcacgtacttattcccccaagagttaagtctttt |
84 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| ||||||||||| |
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| T |
3679573 |
acctccaagactcacatacttattaccccaagaattaagtctttt |
3679617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 42940033 - 42939852
Alignment:
| Q |
8 |
gcatttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaattgctccaa---aggct |
104 |
Q |
| |
|
|||||||||| |||||| | || |||||||||||||| || ||||| | || |||||||| || || ||||| ||| ||||||||||||| ||||| |
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|
| T |
42940033 |
gcatttaaaatggaatttagaaggacaattcgacctcctagactcacaaatttgttcccccacgaatttagtctcttcctcaattgctccaacataggct |
42939934 |
T |
|
| Q |
105 |
cccatgtagacaactttctagaattagctcctaccggcaaccccaaatatttgaaaggaatggatccctcactacaatgtaa |
186 |
Q |
| |
|
|||| || |||| ||| | ||| ||||||| ||||||||||||||||| |||||||||||| || || ||||||||||| |
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|
| T |
42939933 |
cccaagttgacaccttcttcgaactagctccaaccggcaaccccaaatacttgaaaggaatgacaccttctctacaatgtaa |
42939852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 30504274 - 30504409
Alignment:
| Q |
9 |
catttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagtcttttcttcaattgctccaa---aggctc |
105 |
Q |
| |
|
|||| ||||||||||| | ||| ||||| ||||||||||||||| || ||||| ||||||||||| ||||| ||| ||||||||||| |||||| |
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|
| T |
30504274 |
cattcaaaacggaattgagaagagtaattctacctccaaggctcacatatttattaccccaagagttgagtctattccgtaattgctccaacataggctc |
30504373 |
T |
|
| Q |
106 |
ccatgtagacaactttctagaattagctcctaccgg |
141 |
Q |
| |
|
|||| | |||||||| | ||||||||||| ||||| |
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|
| T |
30504374 |
ccatatggacaacttctttgaattagctcccaccgg |
30504409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 48043015 - 48043084
Alignment:
| Q |
10 |
atttaaaacggaattcaagagaacaattcgacctccaaggctcacgtacttattcccccaagagttaagt |
79 |
Q |
| |
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|||||| || ||||| || |||||||||||||| |||||||| | | |||||||||||||||| |||||| |
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|
| T |
48043015 |
atttaacaccgaatttaaaagaacaattcgaccaccaaggctaatgaacttattcccccaagaattaagt |
48043084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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