View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15767_low_10 (Length: 278)
Name: NF15767_low_10
Description: NF15767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15767_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 18820023 - 18820271
Alignment:
| Q |
9 |
aacataagttacaatctcaagataggaagaggaacacagcatgaacaggaagaggaacagaagttaaaaatgcaacaaaaacacagcatgaacagaagct |
108 |
Q |
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| T |
18820023 |
aacagaagttacaatctcaagataggaagaggaacacagcatgaacaggaagaggaacagaagttaaaaacgcagcaaaaacacatcatgaacagaagct |
18820122 |
T |
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| Q |
109 |
aaaaactccaagatctgagagttctgttgaggtggtggtggtgaatgatctgatgtggtgttggtggtttttgattcagcaccggtgttgaaaaagaatc |
208 |
Q |
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| T |
18820123 |
aaaaa-tccaagatctgagagttctgttgaggtggtggtggtgaatgaactgatgtggtgttggtggtttttgattcggcaccggtgttgaaaaagagtc |
18820221 |
T |
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| Q |
209 |
tgagattgctgaaaaagttagtgaggctgtgaagaaggttgttgaagaga |
258 |
Q |
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| T |
18820222 |
tgagattgctgaaaaagttagtgaggccgtgaagaaggttgttgaagaga |
18820271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 262
Target Start/End: Original strand, 44231159 - 44231386
Alignment:
| Q |
35 |
aagaggaacacagcatgaacaggaagaggaacagaagttaaaaatgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
134 |
Q |
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| T |
44231159 |
aagaggaacacaacatgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
44231258 |
T |
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| Q |
135 |
ttgaggtggtggtggtgaatgatctgatgtggtgttggtggtttttgattcagcaccggtgttgaaaaagaatctgagattgctgaaaaagttagtgagg |
234 |
Q |
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| T |
44231259 |
ttgaggtggtggtggtgaatgatctgacgtggtgttggtggtttttgattcggcaccggtgttgaaaaagaatctcagattgctgaaaaagttagtgagg |
44231358 |
T |
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| Q |
235 |
ctgtgaagaaggttgttgaagagagtga |
262 |
Q |
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| T |
44231359 |
ctgtgaagaagattgttgaagagagtga |
44231386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 262
Target Start/End: Complemental strand, 29478583 - 29478356
Alignment:
| Q |
35 |
aagaggaacacagcatgaacaggaagaggaacagaagttaaaaatgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
134 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29478583 |
aagaggaacacaacatgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
29478484 |
T |
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| Q |
135 |
ttgaggtggtggtggtgaatgatctgatgtggtgttggtggtttttgattcagcaccggtgttgaaaaagaatctgagattgctgaaaaagttagtgagg |
234 |
Q |
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| T |
29478483 |
tttaggtggtggtggtgaatgatctgatgtggtgttggtggtttgtgattcggcatcggtgttgaaaaagaatctgagattgctgaaaaagttagtgagg |
29478384 |
T |
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| Q |
235 |
ctgtgaagaaggttgttgaagagagtga |
262 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29478383 |
ctgtgaagaaggttgttgaagagagtga |
29478356 |
T |
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Back To:
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