View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15767_low_4 (Length: 409)

Name: NF15767_low_4
Description: NF15767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15767_low_4
NF15767_low_4
[»] chr5 (13 HSPs)
chr5 (80-386)||(17769152-17769460)
chr5 (142-386)||(39685505-39685749)
chr5 (147-386)||(13517244-13517468)
chr5 (15-79)||(13650617-13650679)
chr5 (15-76)||(41884242-41884303)
chr5 (82-123)||(13517172-13517213)
chr5 (80-123)||(39685772-39685815)
chr5 (146-228)||(39570831-39570913)
chr5 (146-190)||(6735911-6735955)
chr5 (168-220)||(13734616-13734668)
chr5 (146-190)||(21360904-21360948)
chr5 (146-183)||(42092340-42092377)
chr5 (135-266)||(8403294-8403426)
[»] chr8 (8 HSPs)
chr8 (80-386)||(21441769-21442077)
chr8 (80-386)||(41323357-41323665)
chr8 (80-386)||(4072403-4072711)
chr8 (132-369)||(18606004-18606241)
chr8 (290-370)||(2811316-2811397)
chr8 (147-213)||(33538374-33538440)
chr8 (145-226)||(10713850-10713931)
chr8 (150-220)||(30932146-30932216)
[»] chr1 (18 HSPs)
chr1 (84-386)||(10619729-10620033)
chr1 (80-386)||(15757340-15757646)
chr1 (134-325)||(7493385-7493576)
chr1 (144-263)||(44429776-44429895)
chr1 (184-370)||(48770403-48770592)
chr1 (290-377)||(33409752-33409839)
chr1 (146-228)||(43410937-43411019)
chr1 (146-228)||(44592587-44592669)
chr1 (147-216)||(50303945-50304014)
chr1 (145-228)||(6764485-6764568)
chr1 (145-228)||(39618435-39618518)
chr1 (146-190)||(27773553-27773597)
chr1 (147-190)||(50099606-50099649)
chr1 (148-213)||(36156967-36157032)
chr1 (146-213)||(26632996-26633062)
chr1 (80-123)||(44429918-44429961)
chr1 (151-228)||(43022554-43022631)
chr1 (135-172)||(48770378-48770415)
[»] chr6 (8 HSPs)
chr6 (79-386)||(29363720-29364027)
chr6 (79-384)||(34729436-34729743)
chr6 (132-369)||(583151-583388)
chr6 (132-369)||(3886126-3886363)
chr6 (81-245)||(30386778-30386943)
chr6 (83-228)||(13703009-13703156)
chr6 (147-228)||(7590494-7590575)
chr6 (145-194)||(7639611-7639660)
[»] chr3 (14 HSPs)
chr3 (80-386)||(46823467-46823774)
chr3 (80-377)||(17653172-17653471)
chr3 (184-386)||(21295699-21295902)
chr3 (142-370)||(30342659-30342887)
chr3 (144-377)||(40285633-40285866)
chr3 (79-172)||(21295618-21295711)
chr3 (145-228)||(35238708-35238791)
chr3 (80-266)||(35734374-35734561)
chr3 (146-228)||(37224390-37224472)
chr3 (145-228)||(30500921-30501004)
chr3 (147-228)||(22775259-22775340)
chr3 (147-216)||(26769832-26769901)
chr3 (146-190)||(37057524-37057568)
chr3 (223-266)||(35734271-35734314)
[»] chr4 (17 HSPs)
chr4 (80-374)||(43892710-43893006)
chr4 (142-386)||(13768524-13768768)
chr4 (133-370)||(46721856-46722100)
chr4 (144-266)||(32824561-32824683)
chr4 (147-228)||(4608124-4608205)
chr4 (146-228)||(39606296-39606378)
chr4 (146-228)||(27512922-27513004)
chr4 (146-228)||(32595097-32595179)
chr4 (147-228)||(23237516-23237597)
chr4 (146-195)||(30226688-30226737)
chr4 (147-190)||(18493829-18493872)
chr4 (145-228)||(20618755-20618838)
chr4 (147-190)||(22375934-22375977)
chr4 (147-190)||(54508607-54508650)
chr4 (145-190)||(37927781-37927826)
chr4 (146-190)||(44222983-44223027)
chr4 (147-190)||(34021344-34021387)
[»] chr7 (19 HSPs)
chr7 (82-386)||(46211852-46212157)
chr7 (79-384)||(48609283-48609590)
chr7 (80-384)||(83795-84097)
chr7 (179-386)||(39719643-39719850)
chr7 (80-386)||(758503-758800)
chr7 (134-325)||(45809876-45810067)
chr7 (80-266)||(2826678-2826867)
chr7 (134-191)||(33335995-33336052)
chr7 (145-228)||(36558346-36558429)
chr7 (146-228)||(27098887-27098969)
chr7 (146-228)||(27179334-27179416)
chr7 (146-190)||(23333341-23333385)
chr7 (146-190)||(27571639-27571683)
chr7 (144-188)||(39719308-39719352)
chr7 (338-384)||(2826871-2826917)
chr7 (145-190)||(2410950-2410995)
chr7 (146-190)||(41532411-41532455)
chr7 (160-226)||(11468614-11468680)
chr7 (146-228)||(38892149-38892230)
[»] scaffold0049 (2 HSPs)
scaffold0049 (83-386)||(14937-15242)
scaffold0049 (132-331)||(46860-47059)
[»] chr2 (18 HSPs)
chr2 (79-386)||(5382500-5382815)
chr2 (142-370)||(10585096-10585324)
chr2 (132-369)||(36314406-36314644)
chr2 (132-369)||(1592923-1593160)
chr2 (79-263)||(1043292-1043478)
chr2 (80-263)||(9190281-9190466)
chr2 (184-320)||(7494759-7494895)
chr2 (206-326)||(22333390-22333510)
chr2 (80-172)||(7494679-7494771)
chr2 (202-377)||(12563666-12563837)
chr2 (83-320)||(10412608-10412838)
chr2 (135-266)||(25279998-25280128)
chr2 (146-228)||(41732610-41732692)
chr2 (147-190)||(2096103-2096146)
chr2 (146-190)||(21613399-21613443)
chr2 (84-123)||(22338623-22338662)
chr2 (146-187)||(9754039-9754080)
chr2 (146-187)||(14160606-14160647)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 80 - 386
Target Start/End: Complemental strand, 17769460 - 17769152
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||    
T  17769460 caggggcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaaaatatttttcttagcgagtaggtatatttttatatttagctaccccta 17769361  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    ||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  17769360 ataatatatatttagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttgataatgttg 17769261  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17769260 tataagaatcgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 17769161  T
Q  378 gctctcagc 386  Q
    |||||||||    
T  17769160 gctctcagc 17769152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 142 - 386
Target Start/End: Complemental strand, 39685749 - 39685505
Alignment:
Q  142 agcgagtaggtatatttttatatttagctactc-ctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttattt 240  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||||| || | ||||||||||||||  |||||| ||||||||||| |||||||    
T  39685749 agcgagtaggtatatttttatatttagctatcctctaataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatttttattt 39685650  T
Q  241 aacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgttt 340  Q
    |||||||| ||||||||||||| ||| ||||||||  |||| |||  |||||||||||||| |||| ||||||||||||||||||||||||||||  |||    
T  39685649 aacttccgatcgaacttcaaat-atttgataatgtcgtataggaaccgaaagattaacaccaaaaaaagataaataataaataataacaatatttgattt 39685551  T
Q  341 atttaacaaataaagtaatacaattgtaggcccacacgctctcagc 386  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||    
T  39685550 atttaacaaataaagtaatacaattgtagacccacaaactctcagc 39685505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 147 - 386
Target Start/End: Original strand, 13517244 - 13517468
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttc 246  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  || | |||||||||||||||||||||| ||||||| ||||||||||||||||     
T  13517244 gtaggtatatttttatatttagctac-cctaataatatatatttaactaccccaagtttaattttagatgaaataattttttttatctttatttaacttt 13517342  T
Q  247 cggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaa 346  Q
    |||||||| ||||||||||| ||||||||| |||||||              ||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  13517343 cggtcgaaattcaaattatttgataatgttgtataaga--------------acctaaaagagataaataataaataataacaatattttgtttatttaa 13517428  T
Q  347 caaataaagtaatacaattgtaggcccacacgctctcagc 386  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  13517429 caaataaagtaatacaattgtaggtccacacactctcagc 13517468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 13650679 - 13650617
Alignment:
Q  15 aacaagatccttgcatatgcatgcaatgtatttggagaacaacaatatgctttgttcactctatt 79  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13650679 aacaagatccttg--tatgcatgcaatgtatttggagaacaacaatatgctttgttcactctatt 13650617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 41884303 - 41884242
Alignment:
Q  15 aacaagatccttgcatatgcatgcaatgtatttggagaacaacaatatgctttgttcactct 76  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  41884303 aacaagatccttgcatatgcatgcaatgtatttggaggagaacaatatggtttgttcactct 41884242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 13517172 - 13517213
Alignment:
Q  82 ggggcggatggtagtacaagggaggggtagcccttgctaccc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13517172 ggggcggatggtagtacaagggaggggtagcccttgctaccc 13517213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 39685815 - 39685772
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctaccc 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  39685815 caggggcggatggtagaacaagggaggggtagcccttgctaccc 39685772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 39570831 - 39570913
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | || | ||||||  ||||||| || ||| |||||||    
T  39570831 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgtaataatttttt 39570913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 6735911 - 6735955
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  6735911 agtaggtatatttttatatttagctacctctaataatatatattt 6735955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 13734616 - 13734668
Alignment:
Q  168 gctactcctaataatatatatttagttatctcaagtttaattttagatgaaat 220  Q
    ||||| ||||||||||||||||| ||||||  |||||| ||||||||||||||    
T  13734616 gctacccctaataatatatatttggttatcctaagtttgattttagatgaaat 13734668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 21360904 - 21360948
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||    
T  21360904 agtaggtatattattatatttggctacccctaataatatatattt 21360948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 42092377 - 42092340
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataata 183  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  42092377 agtaggtatatttttatgtttagctacccctaataata 42092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 8403294 - 8403426
Alignment:
Q  135 ttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgat-tttttctatc 233  Q
    |||| |||| |||||||||||| ||| |||||||||||  ||||||||||  |||||| || || || ||| ||||||  || ||| || |||||| |||    
T  8403294 tttttttagtgagtaggtatatatttttatttagctacctctaataatatgcatttagctaccttaaattttattttaagtggaataatctttttccatc 8403393  T
Q  234 tttatttaacttccggtcgaacttcaaattatt 266  Q
     |||||||  || | || |||||||||||||||    
T  8403394 cttatttagttttcagttgaacttcaaattatt 8403426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 80 - 386
Target Start/End: Complemental strand, 21442077 - 21441769
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    |||| |||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||    
T  21442077 caggagcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaaaatatttttcttagcgagtaggtatatttttatatttagctaccccta 21441978  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    ||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  21441977 ataatatatatttagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttgataatgttg 21441878  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21441877 tataagaatcgaaagattaacatccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtagacccacac 21441778  T
Q  378 gctctcagc 386  Q
    |||||||||    
T  21441777 gctctcagc 21441769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 80 - 386
Target Start/End: Complemental strand, 41323665 - 41323357
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||          ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  41323665 caggggcggatggtagtacaagggaggggtagcccttgctacccaaaaaaaaaatatttttctgagcgagtaggtatatttttatatttagctaccccta 41323566  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    |||||||||| |||| || | |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||     
T  41323565 ataatatataattagctaccccaagtttaattttagatgaaataattttttctatctttatttaatttccggtcgaacttcaaattatttgataatgttg 41323466  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  41323465 tataagaatcgaaagattaacacccaaaagagataaataataaataataacaatattttgtttatttaacaaataaagtaatacaattgtaggtccacac 41323366  T
Q  378 gctctcagc 386  Q
     ||||||||    
T  41323365 actctcagc 41323357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 80 - 386
Target Start/End: Complemental strand, 4072711 - 4072403
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||          | ||||||| ||||||||||||||||||||||||||||||| ||||    
T  4072711 caggggcggatggtagtacaagggaggggtagcccttgctaccccaaaaattattttttttctgagcgagtaggtatatttttatatttagctaccccta 4072612  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    |||||||||| |||| || | |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||     
T  4072611 ataatatataattagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttacggtagaacttcaaattatttgataatgttg 4072512  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4072511 tataagaatcgaaagattaacacccaaaagagataaataataaataataacaatattttatttatttaacaaataaagtaatacaattgtaggcccacac 4072412  T
Q  378 gctctcagc 386  Q
     ||||||||    
T  4072411 actctcagc 4072403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 132 - 369
Target Start/End: Original strand, 18606004 - 18606241
Alignment:
Q  132 tatttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttcta 231  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| | || | ||||||| ||||||  |||||| |||||||| |    
T  18606004 tatttttttgagcgagtaggtatatttttatatttagctacccctaataatatatatttggctaccccaagttttattttaagtgaaataattttttcca 18606103  T
Q  232 tctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaat 331  Q
    |||||||||||||||||||| ||||| ||||||||  || ||||  || | ||   |||||| |||||||||||||||||||||||||||||||||||||    
T  18606104 tctttatttaacttccggtcaaactttaaattattcaatcatgtcgtacatgatccgaaagaataacacccaaaagagataaataataaataataacaat 18606203  T
Q  332 atttcgtttatttaacaaataaagtaatacaattgtag 369  Q
     |||  ||||||||||||||||| | || |||||||||    
T  18606204 ctttgctttatttaacaaataaaatgattcaattgtag 18606241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 2811316 - 2811397
Alignment:
Q  290 aagattaacacccaaaagagataaataataaataataacaatatttcg-tttatttaacaaataaagtaatacaattgtagg 370  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||| |||| |||||    
T  2811316 aagaataacacccaaaagagataaataataaataataacaatcttttgctttatttaacaaataaaataattcaatcgtagg 2811397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 33538440 - 33538374
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttag 213  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||  |||||||    
T  33538440 gtaggtatatttttatgtttagctactcctaataatatatatttggttacctcgagttcgattttag 33538374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 10713850 - 10713931
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttt 226  Q
    |||| |||||||||||||||| | |||| ||| |||||||| |||| | || | ||||||||||||||| |||||| |||||    
T  10713850 gagttggtatatttttatattaaactaccccttataatatacatttggctaccccaagtttaattttaggtgaaattatttt 10713931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 30932216 - 30932146
Alignment:
Q  150 ggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaat 220  Q
    |||||||||||||||| ||||   ||||||||||||| ||| | |||| ||||||| ||||||| ||||||    
T  30932216 ggtatatttttatattaagctgtccctaataatatatgtttggctatcccaagtttgattttaggtgaaat 30932146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 84 - 386
Target Start/End: Original strand, 10619729 - 10620033
Alignment:
Q  84 ggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactcctaataa 181  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  10619729 ggcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaaaatattttttttaacgagtaggtatatttttatatttagctacccctaataa 10619828  T
Q  182 tatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttctata 281  Q
    ||||||||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||    
T  10619829 tatatatttagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccagtcgtacttcaaattatttgataatgttgtata 10619928  T
Q  282 agaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacgctc 381  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10619929 agaatcgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacgctc 10620028  T
Q  382 tcagc 386  Q
    |||||    
T  10620029 tcagc 10620033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 80 - 386
Target Start/End: Original strand, 15757340 - 15757646
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnnta-tttttcttagcgagtaggtatatttttatatttagctactcctaa 178  Q
    |||||| |||||||||||||||||||||||||||||| ||||||         | |||||||||||||||||||||||||||||||||| |||| |||||    
T  15757340 caggggtggatggtagtacaagggaggggtagccctt-ctaccccaaaaaaaaaatttttcttagcgagtaggtatatttttatatttatctacccctaa 15757438  T
Q  179 taatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttct 278  Q
    |||||||||||||  || | |||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |    
T  15757439 taatatatatttaactaccccaagtttaattttagatgaaataatattttctatctttatttaacttccgatcgaacttcaaattatttgataatgttgt 15757538  T
Q  279 ataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacg 378  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15757539 ataagaatcgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacg 15757638  T
Q  379 ctctcagc 386  Q
    ||||||||    
T  15757639 ctctcagc 15757646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 325
Target Start/End: Original strand, 7493385 - 7493576
Alignment:
Q  134 tttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatc 233  Q
    ||||| |||||||||||||||||||||||||||||||||  | |||||||||||||| | || | ||||||| ||||||  |||||| |||||||| |||    
T  7493385 ttttttttagcgagtaggtatatttttatatttagctacctccaataatatatatttggctaccccaagttttattttaagtgaaataattttttccatc 7493484  T
Q  234 tttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataat 325  Q
    |||||||| ||| ||||||||||||||||||||  || ||||  |||| |||  | |||| |||||||||||||||||||||||||||||||    
T  7493485 tttatttagctttcggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagactaacacccaaaagagataaataataaataat 7493576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 44429895 - 44429776
Alignment:
Q  144 cgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaac 243  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||| | || | ||| ||||||||||  |||||| |||||| |||||||||||||||    
T  44429895 cgagtaggtatatttttatatttagctacccctaataatatttatttggctaccccaaatttaattttaagtgaaataatttttactatctttatttaac 44429796  T
Q  244 ttccggtcgaacttcaaatt 263  Q
    ||||||||||||||||||||    
T  44429795 ttccggtcgaacttcaaatt 44429776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 184 - 370
Target Start/End: Original strand, 48770403 - 48770592
Alignment:
Q  184 tatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttctataag 283  Q
    ||||||||| || | ||||||| ||||||  |||||| |||||||||||||||||| |  ||| |||||||||||||||||||  || ||||  |||| |    
T  48770403 tatatttagctaccccaagttttattttaagtgaaataattttttctatctttattcagtttc-ggtcgaacttcaaattatttaatcatgtcgtatagg 48770501  T
Q  284 aattgaaagattaacacccaaaagagataaat----aataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtagg 370  Q
    ||  |||||| |||||||||||| ||||||||    ||||||||||||||||||||  ||||||||||||||||| | || ||||||||||    
T  48770502 aaccgaaagaataacacccaaaatagataaataataaataaataataacaatatttgttttatttaacaaataaaattattcaattgtagg 48770592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 377
Target Start/End: Complemental strand, 33409839 - 33409752
Alignment:
Q  290 aagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    |||||||||| |||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||  || ||||| ||||||||||||    
T  33409839 aagattaacatccaaaaaagataaataataaataataataatctttggtttatttaacaaataaaacaaaacaatagtaggcccacac 33409752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 43410937 - 43411019
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| |||| |  |||||| |||||||||| ||| |||||||    
T  43410937 agtaggtatatttttatatttagctatccctaataatatatatttggttaccctaagtttgattttagatgtaataatttttt 43411019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 44592587 - 44592669
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | || | ||||||| ||||||| || ||| |||||||    
T  44592587 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagtttgattttaggtgtaataatttttt 44592669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 50304014 - 50303945
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatg 216  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| | ||||||| |||  ||||||||||    
T  50304014 gtaggtatatttttatgtttagctacccctaataatatatatttggctatctcaggttcgattttagatg 50303945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 6764485 - 6764568
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||| |||||||||| |||| ||||||  |||||||||||||||| | |||| ||| |||||||||||||| ||| |||||||    
T  6764485 gagtatgtatatttttgtattaagctaccgctaataatatatatttggctatcccaaatttaattttagatggaataatttttt 6764568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 39618518 - 39618435
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||| | || | |||||||  ||||||||| | |||||||||    
T  39618518 gagttggtatatttttatattaagctacccctaataatatatatttggctaccccaagtttgcttttagatggattgatttttt 39618435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 27773553 - 27773597
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  27773553 agtaggtatatttttatgtttagctacccctaataatatatattt 27773597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 50099606 - 50099649
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  50099606 gtaggtatatttttatgtttagctacccctaataatatatattt 50099649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 36157032 - 36156967
Alignment:
Q  148 taggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttag 213  Q
    |||||||||||||||  |||||||| ||||||||||||||||| | || | |||||| ||||||||    
T  36157032 taggtatatttttatgcttagctacccctaataatatatatttggctaccccaagttcaattttag 36156967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 26632996 - 26633062
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttag 213  Q
    ||||||||||||||||| ||||| ||| | ||||||||||||||| |||| ||||||||  |||||||    
T  26632996 agtaggtatatttttatgtttagttac-cttaataatatatatttggttacctcaagttcgattttag 26633062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 44429961 - 44429918
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctaccc 123  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  44429961 caggggcggatggtagtagtaggcaggggtagcccttgctaccc 44429918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 43022554 - 43022631
Alignment:
Q  151 gtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||||||||||| |||| |||| ||||||||||||||||| | || |  |||||  |||||||||| ||| |||||||    
T  43022554 gtatatttttatgtttaactacccctaataatatatatttggctacccaaagttcgattttagatgtaataatttttt 43022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 48770378 - 48770415
Alignment:
Q  135 ttttcttagcgagtaggtatatttttatatttagctac 172  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  48770378 tttttttagctagtaggtatatttttatatttagctac 48770415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 79 - 386
Target Start/End: Complemental strand, 29364027 - 29363720
Alignment:
Q  79 tcaggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttcttagcgagtaggtatatttttatatttagctactcctaa 178  Q
    |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||||||||    
T  29364027 tcaggggcggatggtagtgcaagggaggggtagcccttgctaccccaaaaaaatatttttctgagcgagtaggtatatttttatatttagctactcctaa 29363928  T
Q  179 taatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttct 278  Q
    |||||||||||||| || | ||| ||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  29363927 taatatatatttagctaccccaaatttaattttaagtgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttgataatgttgt 29363828  T
Q  279 ataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacg 378  Q
    ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  29363827 ataggaaccgaaagattaacacccaaaagagataaataataaataataacaatatttgatttatttaacaaataaagtaatacaattgtaggcccacaca 29363728  T
Q  379 ctctcagc 386  Q
    ||||||||    
T  29363727 ctctcagc 29363720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 79 - 384
Target Start/End: Original strand, 34729436 - 34729743
Alignment:
Q  79 tcaggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactcct 176  Q
    ||||||||||| |||||||||||||||||||||||||||||||||          ||||||||| || |||| ||||||||||||||||||||||| |||    
T  34729436 tcaggggcggacggtagtacaagggaggggtagcccttgctacccccaaaaaaaatatttttctgagtgagtgggtatatttttatatttagctacccct 34729535  T
Q  177 aataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgtt 276  Q
    |||| ||||||||||| || | ||||||||||||||  |||||| |||||||||||||||||||||||| || ||||||||||||||||| |||||| |     
T  34729536 aatagtatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttatttaactttcgatcgaacttcaaattatttgataatatc 34729635  T
Q  277 ctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccaca 376  Q
     |||| |||  |||||||||| ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  34729636 gtataggaaccgaaagattaataccaaaaagagataaataataaataataacaatatttgatttatttaacaaataaagtaatacaattgtaggctcaca 34729735  T
Q  377 cgctctca 384  Q
    | ||||||    
T  34729736 cactctca 34729743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 132 - 369
Target Start/End: Complemental strand, 583388 - 583151
Alignment:
Q  132 tatttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttcta 231  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||| |||||| ||||||| |||||||| |    
T  583388 tatttttttgagcgagtaggtatatttttatatttagctacccctaataatatatatttggttaccccaagttttattttaaatgaaataattttttcca 583289  T
Q  232 tctttatttaacttccggtcgaacttcaaattattagataatgttctataagaat-tgaaagattaacacccaaaagagataaataataaataataacaa 330  Q
    |||||||||||||||||||| ||||| ||||||||  || |||| |||  |||||  |||||| ||||||||||||||||||||||| ||||||||||||    
T  583288 tctttatttaacttccggtcaaactttaaattattcaatcatgtccta-cagaatccgaaagaataacacccaaaagagataaataagaaataataacaa 583190  T
Q  331 tatttcgtttatttaacaaataaagtaatacaattgtag 369  Q
    | |||  ||||||||||||||||| | || |||||||||    
T  583189 tctttgctttatttaacaaataaaatgattcaattgtag 583151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 132 - 369
Target Start/End: Original strand, 3886126 - 3886363
Alignment:
Q  132 tatttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttcta 231  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| | || | ||||||| |||||| ||||||| |||||||| |    
T  3886126 tatttttttgagcgagtaggtatatttttatatttagctacccctaataatatatatttggctaccccaagttttattttaaatgaaataattttttcca 3886225  T
Q  232 tctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaat 331  Q
    |||||||||||||||||||| ||||| ||||||||  || ||||  || | ||   |||||| |||||||||||||||||||||||||||||||||||||    
T  3886226 tctttatttaacttccggtcaaactttaaattattcaatcatgtcgtacaggatccgaaagaataacacccaaaagagataaataataaataataacaat 3886325  T
Q  332 atttcgtttatttaacaaataaagtaatacaattgtag 369  Q
     |||  ||||||||||||||||| | || |||||||||    
T  3886326 ctttgttttatttaacaaataaaatgattcaattgtag 3886363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 81 - 245
Target Start/End: Complemental strand, 30386943 - 30386778
Alignment:
Q  81 aggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn-tatttttcttagcgagtaggtatatttttatatttagctactcctaat 179  Q
    |||||| ||||||||||||||||||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  30386943 aggggcagatggtagtacaagggaggggtagcccttgctacccaaaaaaaaatatttttctgagcgagtaggtatatttttatatttagctacccctaat 30386844  T
Q  180 aatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaactt 245  Q
    ||||||||||||| |||||||||||||||||||  ||||||  |||||||||||||||||||||||    
T  30386843 aatatatatttagctatctcaagtttaattttaagtgaaatatttttttctatctttatttaactt 30386778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 13703009 - 13703156
Alignment:
Q  83 gggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactcctaata 180  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  13703009 gggcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaaaatatttttcttagtaagtaggtatatttttatatttagctacccctaata 13703108  T
Q  181 atatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||||||||||| || |||||||||||||||||||||||| |||||||    
T  13703109 atatatatttagctacctcaagtttaattttagatgaaataatttttt 13703156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 7590575 - 7590494
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| | || | ||||||  |||||||||| ||| |||||||    
T  7590575 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttagatgtaataatttttt 7590494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 7639611 - 7639660
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagtt 194  Q
    |||||| ||||| ||||||||||||||  ||| |||||||||||||||||    
T  7639611 gagtagatatatatttatatttagctatcccttataatatatatttagtt 7639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 80 - 386
Target Start/End: Original strand, 46823467 - 46823774
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntattt-ttcttagcgagtaggtatatttttatatttagctactcctaa 178  Q
    ||||||||||||||||||||||| ||||||||||||||||||||         |    |||| ||||||||||||||||||||||||||||||| |||||    
T  46823467 caggggcggatggtagtacaaggcaggggtagcccttgctacccaaaaaaaaaaaaaattctgagcgagtaggtatatttttatatttagctacccctaa 46823566  T
Q  179 taatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttct 278  Q
    ||||||||| |||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  46823567 taatatataattagctaccccaagtttaattttagatgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttgataatgttgt 46823666  T
Q  279 ataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacg 378  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  46823667 ataagaatcgaaagattaacacccaaaagagataaataataaataataacaatattttatttatttaacaaataaagtaatacaattgtaggcccacaca 46823766  T
Q  379 ctctcagc 386  Q
    ||||||||    
T  46823767 ctctcagc 46823774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 80 - 377
Target Start/End: Complemental strand, 17653471 - 17653172
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttctt--agcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||| ||| ||  ||||||| |||||||||||||||||| |||| ||||    
T  17653471 caggggcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaatatatttttttgagcgagtgggtatatttttatatttaactaccccta 17653372  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    ||||||||||||||| || | ||||||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||      
T  17653371 ataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttatttaactttcggtcgaacttcaaattatttgataatgtcg 17653272  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    |||| |||  |||||||||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  17653271 tataggaaccgaaagattaataccaaaaagagataaataataaataataacaatatttgatttatttaacaaataaagtaatacaattgtaggcccacac 17653172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 184 - 386
Target Start/End: Original strand, 21295699 - 21295902
Alignment:
Q  184 tatatttagttatctcaagtttaattttagatgaaatgattttttctatcttt-atttaacttccggtcgaacttcaaattattagataatgttctataa 282  Q
    ||||||||| || | ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||    
T  21295699 tatatttagctaccccaaatttaattttagatgaaataattttttctatcttttatttaacttccggtcgaacttcaaattatttgataatgttgtataa 21295798  T
Q  283 gaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacgctct 382  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21295799 gaatcgaaagattaacacctaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacgctct 21295898  T
Q  383 cagc 386  Q
    ||||    
T  21295899 cagc 21295902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 142 - 370
Target Start/End: Original strand, 30342659 - 30342887
Alignment:
Q  142 agcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttattta 241  Q
    |||||||||| |||||||||| |||| ||||  |||||||||||||||||| || | ||| ||| ||||||  |||||| ||| |||| |||||||||||    
T  30342659 agcgagtagggatatttttatttttaactacctctaataatatatatttagctaccccaaattttattttaagtgaaataattctttccatctttattta 30342758  T
Q  242 acttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgttta 341  Q
     ||| ||||||||||||||||||||  || ||||  |||| |||| | |||| ||||||||||||||||||||||||||||||||||||| |||  ||||    
T  30342759 gctttcggtcgaacttcaaattatttaatcatgtcgtataggaatcggaagaataacacccaaaagagataaataataaataataacaatctttgcttta 30342858  T
Q  342 tttaacaaataaagtaatacaattgtagg 370  Q
    ||||||||||||| |||| ||||||||||    
T  30342859 tttaacaaataaaataattcaattgtagg 30342887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 377
Target Start/End: Original strand, 40285633 - 40285866
Alignment:
Q  144 cgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt-ctatctttatttaa 242  Q
    ||||||| |||||||| |||||||||||  ||||||||||||||||||| |||||||||||| ||||||  ||||||  |||||| | ||| |||||||     
T  40285633 cgagtagatatatttt-atatttagctatccctaataatatatatttagctatctcaagtttgattttaagtgaaatattttttttcaatcattatttag 40285731  T
Q  243 cttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttat 342  Q
    ||| ||||||||||||||||||||  || ||||  |||| |||  | ||||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||    
T  40285732 ctttcggtcgaacttcaaattatttaatcatgtcatataggaaccggaagattaacacccaaaaaagataaataataaataataataatctttggttaat 40285831  T
Q  343 ttaacaaataaagtaatacaattgtaggcccacac 377  Q
    |||||||||||| ||| ||||| |||||| |||||    
T  40285832 ttaacaaataaaataagacaatagtaggctcacac 40285866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 21295618 - 21295711
Alignment:
Q  79 tcaggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttcttagcgagtaggtatatttttatatttagctac 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  21295618 tcaggggcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaatatttttcttagcgagtaggtatatttttatatttagctac 21295711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 35238791 - 35238708
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||| | || | |||||||||||||||||||| |||||||||    
T  35238791 gagttggtatatttttatattaagctacccctaataatatatatttggctaccccaagtttaattttagatgaattgatttttt 35238708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 35734561 - 35734374
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    |||||||||||||||||| |||||||||||||| ||||||||||          ||||||||| || |||||||||||||||||||||||| ||| | ||    
T  35734561 caggggcggatggtagtataagggaggggtagctcttgctaccccaaaaaaaaatatttttctgagggagtaggtatatttttatatttagttaccctta 35734462  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttct-atctttatttaacttccggtcgaacttcaaattatt 266  Q
    ||||||| ||||||| || |  || ||| ||||||  |||||| ||||||| | |||| |||||| ||||||  ||||||| ||||||||    
T  35734461 ataatatgtatttagctaccctaaattttattttaagtgaaataattttttttcatctatatttagcttccg--cgaacttgaaattatt 35734374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 37224390 - 37224472
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | |||| ||||||  ||||||| || ||| |||||||    
T  37224390 agtaggtatatttttatgtttagctacccctaataatatatatttggctatcccaagttcgattttaggtgtaataatttttt 37224472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 30501004 - 30500921
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||| |||||||||||||||| |||||| ||||||||||||||| | | || | ||||||| |||||||||| | |||||||||    
T  30501004 gagttggtatatttttatattaagctacccctaataatatatatctggctaccccaagtttgattttagatggattgatttttt 30500921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 22775340 - 22775259
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| | || | ||||||  ||||||| || ||| |||||||    
T  22775340 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgtaataatttttt 22775259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 26769901 - 26769832
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatg 216  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| | || | ||||||  ||||||||||    
T  26769901 gtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttagatg 26769832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 37057524 - 37057568
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  37057524 agtaggtatatttttatgtttagctacccctaataatatatattt 37057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 35734314 - 35734271
Alignment:
Q  223 ttttttctatctttatttaacttccggtcgaacttcaaattatt 266  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  35734314 ttttttccatctttatttagcttccggtcgaacttcaaattatt 35734271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 80 - 374
Target Start/End: Complemental strand, 43893006 - 43892710
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||          ||||||||| || ||||| |||||||||||||||||||||| ||||    
T  43893006 caggggcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaaagtatttttctgagtgagtatgtatatttttatatttagctaccccta 43892907  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    ||||||||||||||| |  | |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||     
T  43892906 ataatatatatttagctgccccaagtttaattttagatgaaataattttttctatctttatttaacttccgatcgaacttcaaattatttgataatgttg 43892807  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggccca 374  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  43892806 tataagaatcgaaagattaacatccaaaagagataaataataaataataacaatattttgtttatttaacaaataaagtaatccaattgtaggccca 43892710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 142 - 386
Target Start/End: Original strand, 13768524 - 13768768
Alignment:
Q  142 agcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttattta 241  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||  |||||| ||||||||||||||||||||    
T  13768524 agcgagtaggtatatttttatatttagctacccctaataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttattta 13768623  T
Q  242 acttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgttta 341  Q
    ||||||||||||||||||||||||| ||||||||  |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13768624 acttccggtcgaacttcaaattatttgataatgtcgtataggaaccgaaagattaacacccaaaagagataaataataaataataacaatatttgattta 13768723  T
Q  342 tttaacaaataaagtaatacaattgtaggcccacacgctctcagc 386  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||    
T  13768724 tttaacaaataaagtaatacaattgtaggtccacacactctcagc 13768768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 133 - 370
Target Start/End: Original strand, 46721856 - 46722100
Alignment:
Q  133 atttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctat 232  Q
    |||||| | |||||||||| |||||||||| ||||||||| ||||||||||||||||||| || | ||| ||| ||||||  |||||| ||| |||| ||    
T  46721856 atttttttgagcgagtagggatatttttatttttagctacccctaataatatatatttagctaccccaaattttattttaagtgaaataattctttccat 46721955  T
Q  233 ctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagag-------ataaataataaataat 325  Q
    ||||||||| ||| ||||||||||||||||||||  || ||||  |||| |||  | |||| |||||||||||||||       ||||||||||||||||    
T  46721956 ctttatttagctttcggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagaataacacccaaaagagataaataataaataataaataat 46722055  T
Q  326 aacaatatttcgtttatttaacaaataaagtaatacaattgtagg 370  Q
    |||||| |||  ||||||||||||||||| |||| ||||||||||    
T  46722056 aacaatctttgctttatttaacaaataaaataattcaattgtagg 46722100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 32824683 - 32824561
Alignment:
Q  144 cgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaac 243  Q
    |||||||||||||||||||||||| |||| |||| ||||| |||||| | |||| ||| ||| ||||||  |||||| |||||||  || ||||||||||    
T  32824683 cgagtaggtatatttttatatttaactacccctagtaataaatatttggctatcccaaattttattttaagtgaaataatttttttcatttttatttaac 32824584  T
Q  244 ttccggtcgaacttcaaattatt 266  Q
    |||||||||||||||||||||||    
T  32824583 ttccggtcgaacttcaaattatt 32824561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 4608124 - 4608205
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| | || ||||||||  |||||||||| ||| |||||||    
T  4608124 gtaggtatatttttatgtttagctacccctaataatatatatttggctacctcaagttcgattttagatgtaatcatttttt 4608205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 39606378 - 39606296
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | || ||||||||  ||||||| || ||| |||||||    
T  39606378 agtaggtatatttttatgtttagctacccctaataatatatatttggctacctcaagttcgattttaggtgcaataatttttt 39606296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 27512922 - 27513004
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | || | ||||||  ||||||| || ||| |||||||    
T  27512922 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgtaataatttttt 27513004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 32595179 - 32595097
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | || | ||||||  ||||||| || ||| |||||||    
T  32595179 agtaggtatatttttatgtttagctacccctaataatatatatttggctaccccaagttcgattttaggtgcaataatttttt 32595097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 23237597 - 23237516
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| | |  | ||||||  |||||||||| ||| |||||||    
T  23237597 gtaggtatatttttatgtttagctacccctaataatatatatttggctgccccaagttcgattttagatgtaataatttttt 23237516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 30226737 - 30226688
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagtta 195  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  30226737 agtaggtatattattatatttggctactcctaataatatatatttggtta 30226688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 18493872 - 18493829
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  18493872 gtaggtatatttttatgtttagctacccctaataatatatattt 18493829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 20618755 - 20618838
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||||||||||||||| |||| |||||| ||||||||||||| ||| | || | ||| |||||||||||||  ||| |||||||    
T  20618755 gagtaggtatatttttgtattaagctacccctaataatatatgtttggctaccccaaatttaattttagatagaataatttttt 20618838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 22375977 - 22375934
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  22375977 gtaggtatatttttatgtttagctacccctaataatatatattt 22375934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 54508650 - 54508607
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  54508650 gtaggtatatttttatgtttagctacccctaataatatatattt 54508607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 37927781 - 37927826
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    ||||| |||||||||||||||||||||| | |||||||||||||||    
T  37927781 gagtatgtatatttttatatttagctacccataataatatatattt 37927826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 44223027 - 44222983
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||    
T  44223027 agtaggtatatttttatgtttaactacccctaataatatatattt 44222983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 34021387 - 34021344
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||    
T  34021387 gtaggtatatttttatgtttagctacccctaatagtatatattt 34021344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 82 - 386
Target Start/End: Complemental strand, 46212157 - 46211852
Alignment:
Q  82 ggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn-tatttttcttagcgagtaggtatatttttatatttagctactcctaata 180  Q
    ||||||||||||||| ||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  46212157 ggggcggatggtagtgcaagggaggggtagcccttgctaccccaaaaaaaatatttttctgagcgagtaggtatatttttatatttagctacttctaata 46212058  T
Q  181 atatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttctat 280  Q
    |||||||||||| || | ||| ||||||||||  |||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  46212057 atatatatttagctaccccaaatttaattttaagtgaaataattttttctttctttatttaacttccggtcgaacttcaaattatttgataatgtcgtat 46211958  T
Q  281 aagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacgct 380  Q
    | |||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||    
T  46211957 aggaaccgaaagattaacacccaaaagagataaataataaataataacaatatttgatttatttaacaaataaagtaatacaattgtaggcccacacact 46211858  T
Q  381 ctcagc 386  Q
    ||||||    
T  46211857 ctcagc 46211852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 79 - 384
Target Start/End: Complemental strand, 48609590 - 48609283
Alignment:
Q  79 tcaggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactcct 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||          ||||||||| ||||||| |||||||||||||||||| |||| |||    
T  48609590 tcaggggcggatggtagtacaagggaggggtagcccttgctaccccaaaaaaaaatatttttctgagcgagtgggtatatttttatatttaactacccct 48609491  T
Q  177 aataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgtt 276  Q
    |||||||||||||||| || | ||||||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||     
T  48609490 aataatatatatttagctaccccaagtttaattttaagtgaaataattttttctatctttatttaactttcggtcgaacttcaaattatttgataatgtc 48609391  T
Q  277 ctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccaca 376  Q
     |||| |||  |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  48609390 gtataggaaccgaaagattaataccaaaaagagataaataataaataataacaatattttgtttatttaacaaataaagtaatacaattgtaggctcaca 48609291  T
Q  377 cgctctca 384  Q
    | ||||||    
T  48609290 cactctca 48609283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 80 - 384
Target Start/End: Complemental strand, 84097 - 83795
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||||||||    ||||||||||||||||          ||||||| | ||||||||||||||||||||||||||||||| ||||    
T  84097 caggggcggatggtagtacaaggg----gtagcccttgctaccccaaaaaaaaatatttttttaagcgagtaggtatatttttatatttagctaccccta 84002  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    |||||||||||||||||| | ||| ||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||      
T  84001 ataatatatatttagttaccccaaatttaattttaagtgaaataaatttttctatctttatttaacttccggtcgaacttcaaattatttgataatgtcg 83902  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  83901 tataggaaccgaaagattaacacccaaaagagataaataataaataataacaatatttgatttatttaacaaataaagtaatacaattgtaggcccacac 83802  T
Q  378 gctctca 384  Q
     ||||||    
T  83801 actctca 83795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 179 - 386
Target Start/End: Original strand, 39719643 - 39719850
Alignment:
Q  179 taatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttct 278  Q
    |||||||||||||| |||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |    
T  39719643 taatatatatttagctatcccaggtttaattttagatgaaataattttttctatctttatttaactttcggtcgaactttaaattatttgataatgttgt 39719742  T
Q  279 ataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacg 378  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  39719743 ataagaatcgaaagattaacacccaaaagagataaataataaataataacaatattttgtttatttaacaaataaagtaatacaattgtaggcccacaca 39719842  T
Q  379 ctctcagc 386  Q
    ||||||||    
T  39719843 ctctcagc 39719850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 80 - 386
Target Start/End: Original strand, 758503 - 758800
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn--tatttttcttagcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||||||||||||||||| ||||||||||          ||||||||| ||| |||||||||||||||||||||| |||| | ||    
T  758503 caggggcggatggtagtacaagggaggggtagctcttgctaccccaaaaaaaaatatttttctgagcaagtaggtatatttttatatttatctaccctta 758602  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttc 277  Q
    ||||||||||||||| || | ||| ||||||||||  |||||| ||||||||||           ||| |||||||||||||||||||| ||||||||      
T  758603 ataatatatatttagctaccccaaatttaattttaagtgaaataattttttcta-----------ctttcggtcgaacttcaaattatttgataatgtca 758691  T
Q  278 tataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  758692 tataggaaccgaaagattaacacccaaaagagataaataataaataataacaatatttgatttatttaacaaataaagtaatacaaatgtaggcccacac 758791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 325
Target Start/End: Complemental strand, 45810067 - 45809876
Alignment:
Q  134 tttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatc 233  Q
    ||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| | || | ||||||| ||||||  |||||| |||||||| |||    
T  45810067 ttttttttagcgagtaggtatatttttatatttagctacccccaataatatatatttggctaccccaagttttattttaagtgaaataattttttccatc 45809968  T
Q  234 tttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataat 325  Q
    |||||||| ||||||||||||||||||||||||  || ||||  |||| |||  | |||| |||||||||||||||||||||||||||||||    
T  45809967 tttatttagcttccggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagactaacacccaaaagagataaataataaataat 45809876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 2826678 - 2826867
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttctt---agcgagtaggtatatttttatatttagctactcct 176  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||        | ||||| ||   ||||| ||||||||||||||||||||||||   ||    
T  2826678 caggggtggatggttgtataagggaggggtagcccttgctacccccaaaattttttttttttttgagcgattaggtatatttttatatttagctatctct 2826777  T
Q  177 aataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattatt 266  Q
    |||||||||||||||| ||   ||||||||||| ||  |||||| |||||||||||||||| ||| ||||||||| || |||||||||||    
T  2826778 aataatatatatttagctactccaagtttaattgtaagtgaaataattttttctatctttaattaccttccggtcaaaattcaaattatt 2826867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 33336052 - 33335995
Alignment:
Q  134 tttttcttagcgagtaggtatatttttatatttagctactcctaataatatatattta 191  Q
    ||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  33336052 ttttttttagcgggtaggtatatatttatatttagctacccctaataatatatattta 33335995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 36558346 - 36558429
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    |||| |||||||||||||||| |  ||| ||||||||||||||||| | || ||||||||| |||||||||| | |||||||||    
T  36558346 gagttggtatatttttatattaaattacccctaataatatatatttggctacctcaagtttgattttagatggattgatttttt 36558429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 27098969 - 27098887
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||| ||| ||||| ||||||||| ||||||||||||||||| | |||| ||| |||||||||| ||| ||| |||||||    
T  27098969 agtaggtttatatttatgtttagctacccctaataatatatatttggctatcccaaatttaattttaaatgtaataatttttt 27098887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 27179334 - 27179416
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||| ||| ||||| ||||||||| ||||||||||||||||| | |||| ||| |||||||||| ||| ||| |||||||    
T  27179334 agtaggtttatatttatgtttagctacccctaataatatatatttggctatcccaaatttaattttaaatgtaataatttttt 27179416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 23333385 - 23333341
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  23333385 agtaggtatatttttatgtttagctacccctaataatatatattt 23333341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 27571683 - 27571639
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||    
T  27571683 agtaggtatatttttatgtttagctacccctaataatatatattt 27571639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 39719308 - 39719352
Alignment:
Q  144 cgagtaggtatatttttatatttagctactcctaataatatatat 188  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  39719308 cgagtaggtatatttttatatttagctatccctaataatatatat 39719352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 384
Target Start/End: Original strand, 2826871 - 2826917
Alignment:
Q  338 tttatttaacaaataaagtaatacaattgtaggcccacacgctctca 384  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  2826871 tttatttaacaaataaaataatacaattgtaggcctacacactctca 2826917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 2410950 - 2410995
Alignment:
Q  145 gagtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||| |||||||||||||||| |||||| |||||||||||||||||    
T  2410950 gagttggtatatttttatattaagctacccctaataatatatattt 2410995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 41532411 - 41532455
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||    
T  41532411 agtaggtatattattatatttggctacccctaataatatatattt 41532455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 11468614 - 11468680
Alignment:
Q  160 tatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttt 226  Q
    ||||||| |||||  |||||||||||||||| | || ||||||||| ||||||| |||||| |||||    
T  11468614 tatatttggctacctctaataatatatatttggctacctcaagtttgattttagttgaaataatttt 11468680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 38892230 - 38892149
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||||||||||| ||||||||| ||| |||||||||||||  ||| | ||||||  ||||||| || ||| |||||||    
T  38892230 agtaggtatatttttatgtttagctac-cctgataatatatatttgattaccccaagttcgattttaggtgtaataatttttt 38892149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 83 - 386
Target Start/End: Original strand, 14937 - 15242
Alignment:
Q  83 gggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnnt--atttttcttagcgagtaggtatatttttatatttagctactcctaata 180  Q
    ||||||||||||||||||||||||||||||||||||| |||        |  |||||||| |||||||||||||||||||||| |||||||| |||||||    
T  14937 gggcggatggtagtacaagggaggggtagcccttgctgcccaaaaaaaatttatttttctgagcgagtaggtatatttttataattagctacccctaata 15036  T
Q  181 atatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttctat 280  Q
    |||||||||||| || | ||| ||||||||||  |||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||  |||    
T  15037 atatatatttagctaccccaaatttaattttaagtgaaataattttttctatctttatttaacttccggtcgaacttttaattatttgataatgtcgtat 15136  T
Q  281 aagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacacgct 380  Q
    | |||  ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||    
T  15137 aggaaccgaaagattaacacccgaaagagataaataataaataataacaatatttggtttatataacaaataaagtaatacaattgtaggcccacacact 15236  T
Q  381 ctcagc 386  Q
    ||||||    
T  15237 ctcagc 15242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 132 - 331
Target Start/End: Original strand, 46860 - 47059
Alignment:
Q  132 tatttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttcta 231  Q
    ||||||| | || |||||||||||||||||||||||||||| ||||||||||||||||| | || | ||||||| |||||| ||||||| |||||||| |    
T  46860 tatttttttgagtgagtaggtatatttttatatttagctacccctaataatatatatttggctaccccaagttttattttaaatgaaataattttttcca 46959  T
Q  232 tctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaat 331  Q
    |||||||||||||||||||| ||||| ||||||||  || ||||  || | ||   |||||| |||||||||||||||||||||||||||||||||||||    
T  46960 tctttatttaacttccggtcaaactttaaattattcaatcatgtcgtacaggatccgaaagaataacacccaaaagagataaataataaataataacaat 47059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 79 - 386
Target Start/End: Complemental strand, 5382815 - 5382500
Alignment:
Q  79 tcaggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnn----tatttttcttagcgagtaggtatatttttatatttagctactc 174  Q
    ||||||||||||||||||||||||||| |||||||||||||||||            ||||||||| ||| ||||||||||||||||||||||||||| |    
T  5382815 tcaggggcggatggtagtacaagggagaggtagcccttgctacccccaaaaaaaaaatatttttctgagcaagtaggtatatttttatatttagctaccc 5382716  T
Q  175 ctaataatatatat--ttagttatctc-aagtttaattttaga-tgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagat 270  Q
    ||||||||||||||  |||| || | | || |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382715 ctaataatatatatatttagctacccccaaatttaattttaaagtgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttgat 5382616  T
Q  271 aatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtagg 370  Q
    |||||  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5382615 aatgtcgtataagaaccgaaagattaacacccaaaagagataaataataaataataacaatatttggtttatttaacaaataaagtaatacaattgtagg 5382516  T
Q  371 cccacacgctctcagc 386  Q
    | ||||| ||||||||    
T  5382515 ctcacacactctcagc 5382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 142 - 370
Target Start/End: Original strand, 10585096 - 10585324
Alignment:
Q  142 agcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttattta 241  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||||||||| |||| ||| ||| ||||||  |||||| ||| |||| |||||||||||    
T  10585096 agcgagtagggatatttttatttttagctacccctaataatatatatttagctatcccaaattttattttaagtgaaataattctttccatctttattta 10585195  T
Q  242 acttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaatatttcgttta 341  Q
     ||| ||||||||||||||||||||  || ||||  |||| |||  | |||| ||||||||||||||||||||||||||||||||||||| |||  ||||    
T  10585196 gctttcggtcgaacttcaaattatttaatcatgtcgtataggaaccggaagaataacacccaaaagagataaataataaataataacaatctttgcttta 10585295  T
Q  342 tttaacaaataaagtaatacaattgtagg 370  Q
    ||||||||||||| |||| ||||| ||||    
T  10585296 tttaacaaataaaataattcaattatagg 10585324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 132 - 369
Target Start/End: Complemental strand, 36314644 - 36314406
Alignment:
Q  132 tatttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctc-aagtttaattttagatgaaatgattttttct 230  Q
    ||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||| | || | | |||||| |||||| ||||||| ||||||||     
T  36314644 tatttttttgagcgagtaggtatatttttatatttagttacccctaataatatatatttggctacccccaagttttattttaaatgaaataattttttcc 36314545  T
Q  231 atctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaa 330  Q
    ||||||||||||||||||||| ||||| ||||||||  || ||||  |||| ||   |||||| ||||| ||||||||||||||||||||||||||||||    
T  36314544 atctttatttaacttccggtcaaactttaaattattcaatcatgtcgtataggatccgaaagaataacatccaaaagagataaataataaataataacaa 36314445  T
Q  331 tatttcgtttatttaacaaataaagtaatacaattgtag 369  Q
    | |||  ||||||||||||||||| | || |||||||||    
T  36314444 tctttgctttatttaacaaataaaatgattcaattgtag 36314406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 132 - 369
Target Start/End: Complemental strand, 1593160 - 1592923
Alignment:
Q  132 tatttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttcta 231  Q
    ||||||| | ||||||| ||||||||||||||||||| ||| ||||||||||||||||| | || | ||||||| |||||| ||||||| |||||||| |    
T  1593160 tatttttttgagcgagttggtatatttttatatttagttacccctaataatatatatttggctaccccaagttttattttaaatgaaataattttttcca 1593061  T
Q  232 tctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaaagagataaataataaataataacaat 331  Q
    |||||||||||||||||||| ||||| ||||||||  || ||||  || | ||  ||||||| ||  |||||||||||||||||||||||||||||||||    
T  1593060 tctttatttaacttccggtcaaactttaaattattcaatcatgtcgtacaggatctgaaagaatagaacccaaaagagataaataataaataataacaat 1592961  T
Q  332 atttcgtttatttaacaaataaagtaatacaattgtag 369  Q
     |||  ||||||||||||||||| | || |||||||||    
T  1592960 ctttactttatttaacaaataaaatgattcaattgtag 1592923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 79 - 263
Target Start/End: Complemental strand, 1043478 - 1043292
Alignment:
Q  79 tcaggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttctt--agcgagtaggtatatttttatatttagctactcct 176  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||        | ||||| ||  ||||||||||||||||||||||||||||||| |||    
T  1043478 tcaggggcggatggtagtagtaggcaggggtagcccttgctaccccaaatttttttttttttttgagcgagtaggtatatttttatatttagctacccct 1043379  T
Q  177 aataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaatt 263  Q
    |||||||| ||||| | || | ||||||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  1043378 aataatatttatttggctaccccaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 1043292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 80 - 263
Target Start/End: Complemental strand, 9190466 - 9190281
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttctt--agcgagtaggtatatttttatatttagctactccta 177  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||        | ||||| ||  ||||||||||||||||||||||||||||||| ||||    
T  9190466 caggggcggatggtagtagtaggcaggggtagcccttgctaccccaaaataatttttttttttgagcgagtaggtatatttttatatttagctaccccta 9190367  T
Q  178 ataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaatt 263  Q
    ||||||| ||||| | || | ||||||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  9190366 ataatatttatttggctaccccaagtttaattttaagtgaaataatttttactatctttatttaacttccggtcgaacttcaaatt 9190281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 7494759 - 7494895
Alignment:
Q  184 tatatttagttatctcaagtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttctataag 283  Q
    ||||||||| || | ||| ||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |    
T  7494759 tatatttagctaccccaaatttaattttaagtgaaataattttttctatctttatttaacttccggtcgaacttcaaattatttgataatgtcgtatagg 7494858  T
Q  284 aattgaaagattaacacccaaaagagataaataataa 320  Q
    ||  ||||||||||||||||||||||| ||| |||||    
T  7494859 aaccgaaagattaacacccaaaagagaaaaagaataa 7494895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 22333510 - 22333390
Alignment:
Q  206 aattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacccaaa 305  Q
    |||||||  |||||| |||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||| || | |||| | ||||||||||||||||    
T  22333510 aattttatgtgaaataattttttccatctttatttagcttccggtcaaacttcaaattatttgataatgttgtaaaggaatcggaagattaacacccaaa 22333411  T
Q  306 agagataaataataaataata 326  Q
     |||||||||||||| |||||    
T  22333410 ggagataaataataagtaata 22333390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 7494679 - 7494771
Alignment:
Q  80 caggggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttcttagcgagtaggtatatttttatatttagctac 172  Q
    |||||||||||| |||||||||||||||||||||||||||||||        ||||||| | |||||||||||||||||||||||||||||||    
T  7494679 caggggcggatgatagtacaagggaggggtagcccttgctacccaaaaaaaatatttttttgagcgagtaggtatatttttatatttagctac 7494771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 12563837 - 12563666
Alignment:
Q  202 gtttaattttagatgaaatgattttttctatctttatttaacttccggtcgaacttcaaattattagataatgttctataagaattgaaagattaacacc 301  Q
    |||| ||||||  |||||| |||||||  ||  ||||||| |||||||||||||||||||||| |  || ||||  |||  |||||| |||||||||| |    
T  12563837 gttttattttaagtgaaataatttttttcattcttatttagcttccggtcgaacttcaaattacttaatcatgtcgtatgggaattggaagattaacatc 12563738  T
Q  302 caaaagagataaataataaataataacaatatttcgtttatttaacaaataaagtaatacaattgtaggcccacac 377  Q
    |||||||||||||||||||    ||| ||| ||| |||||||||||||||||| ||| ||| | ||||||||||||    
T  12563737 caaaagagataaataataa----taataatctttggtttatttaacaaataaaataagacagtagtaggcccacac 12563666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 320
Target Start/End: Original strand, 10412608 - 10412838
Alignment:
Q  83 gggcggatggtagtacaagggaggggtagcccttgctacccnnnnnnnntatttttcttagcgagtaggtatatttttatatttagctactcctaataat 182  Q
    ||||||||||||||| ||||||||| |||||||||||||||        | ||||| ||| |||||| | |||||||||||||||||||   ||||||||    
T  10412608 gggcggatggtagtataagggaggg-tagcccttgctaccccaatt---ttttttttttaacgagtatgcatatttttatatttagctatctctaataat 10412703  T
Q  183 atatatttagttatctcaagtttaattttagatgaaatgattttttct-atctttatttaacttccggtcgaacttcaaattattagataatgttctata 281  Q
    ||| |||||| || | ||| ||| ||||||  |||| | ||||||| | || ||||||||||||  ||| ||||||||||||||    | ||||| ||||    
T  10412704 atacatttagcta-cccaaattttattttaagtgaactaattttttttcatgtttatttaacttttggttgaacttcaaattat---gtcatgttgtata 10412799  T
Q  282 agaattgaaagattaacacccaaaagagataaataataa 320  Q
     ||| |  |||||||||||||||||||||||||||||||    
T  10412800 ggaactagaagattaacacccaaaagagataaataataa 10412838  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 266
Target Start/End: Original strand, 25279998 - 25280128
Alignment:
Q  135 ttttcttagcgagtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgattttttctatct 234  Q
    |||| |||| |||||||||||| ||||||||| |||||| |||||||||||||||||  |||| ||| ||| |||||| ||||  |  ||||||| |||     
T  25279998 tttttttagtgagtaggtatatatttatatttggctacttctaataatatatatttaactatcccaaattttattttaaatgatttttttttttccatcc 25280097  T
Q  235 ttatttaacttccggtcgaacttcaaattatt 266  Q
    |||||| | |||  |||||||||| |||||||    
T  25280098 ttattt-agttcatgtcgaacttcgaattatt 25280128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 41732692 - 41732610
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatatttagttatctcaagtttaattttagatgaaatgatttttt 228  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||||| | || | ||||||  ||||||| |||||| |||||||    
T  41732692 agtaggtatgtttttatatgtagctacccctaataatatatatttggctaccccaagttagattttagttgaaataatttttt 41732610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 2096103 - 2096146
Alignment:
Q  147 gtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  2096103 gtaggtatatttttatgtttagctacccctaataatatatattt 2096146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 21613443 - 21613399
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatatattt 190  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||    
T  21613443 agtaggtatattattatatttggctacccctaataatatatattt 21613399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 22338662 - 22338623
Alignment:
Q  84 ggcggatggtagtacaagggaggggtagcccttgctaccc 123  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  22338662 ggcggatggtagtataagggaggggtagcccgtgctaccc 22338623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 9754039 - 9754080
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatata 187  Q
    |||||||||||||||||||||||||||   ||||||||||||    
T  9754039 agtaggtatatttttatatttagctaccgttaataatatata 9754080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 14160647 - 14160606
Alignment:
Q  146 agtaggtatatttttatatttagctactcctaataatatata 187  Q
    ||||||||||||| |||| |||||||| ||||||||||||||    
T  14160647 agtaggtatatttgtatacttagctacccctaataatatata 14160606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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