View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15767_low_5 (Length: 395)

Name: NF15767_low_5
Description: NF15767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15767_low_5
NF15767_low_5
[»] chr8 (21 HSPs)
chr8 (240-383)||(26997816-26997953)
chr8 (240-383)||(6297468-6297605)
chr8 (240-371)||(9800302-9800427)
chr8 (240-372)||(10047485-10047610)
chr8 (243-383)||(6297982-6298116)
chr8 (240-383)||(9800045-9800182)
chr8 (240-372)||(13315208-13315334)
chr8 (240-383)||(7344803-7344940)
chr8 (296-383)||(16662224-16662311)
chr8 (296-383)||(21006069-21006156)
chr8 (296-370)||(6297822-6297896)
chr8 (296-383)||(39234892-39234979)
chr8 (240-372)||(16662430-16662555)
chr8 (296-372)||(12489284-12489360)
chr8 (240-351)||(17914203-17914308)
chr8 (294-370)||(26243355-26243431)
chr8 (304-372)||(44024289-44024357)
chr8 (296-371)||(17915466-17915541)
chr8 (297-383)||(21005779-21005865)
chr8 (294-351)||(10047857-10047914)
chr8 (240-351)||(44148583-44148688)
[»] chr6 (13 HSPs)
chr6 (240-383)||(17157552-17157689)
chr6 (296-383)||(21113085-21113172)
chr6 (240-383)||(5974017-5974154)
chr6 (240-372)||(7645940-7646066)
chr6 (296-348)||(1869507-1869559)
chr6 (240-372)||(8710299-8710424)
chr6 (296-372)||(14712964-14713040)
chr6 (296-372)||(25932343-25932419)
chr6 (240-349)||(4510194-4510298)
chr6 (240-326)||(211447-211527)
chr6 (309-383)||(25932148-25932222)
chr6 (240-373)||(211678-211805)
chr6 (240-292)||(17157865-17157917)
[»] chr4 (32 HSPs)
chr4 (244-383)||(48553906-48554039)
chr4 (240-369)||(7118125-7118248)
chr4 (240-372)||(29691870-29691996)
chr4 (240-372)||(51906777-51906903)
chr4 (296-372)||(35166824-35166900)
chr4 (240-370)||(29691531-29691655)
chr4 (240-351)||(3296549-3296654)
chr4 (301-383)||(26168053-26168135)
chr4 (294-364)||(30608599-30608669)
chr4 (240-371)||(56106420-56106545)
chr4 (240-382)||(41510074-41510210)
chr4 (240-351)||(3296923-3297028)
chr4 (296-371)||(30608301-30608376)
chr4 (296-383)||(34129247-34129334)
chr4 (240-372)||(51906426-51906552)
chr4 (296-371)||(1791507-1791582)
chr4 (296-371)||(30952960-30953035)
chr4 (296-372)||(30047974-30048050)
chr4 (296-372)||(30062315-30062391)
chr4 (258-379)||(34129018-34129133)
chr4 (298-368)||(48760077-48760147)
chr4 (240-372)||(1791154-1791280)
chr4 (240-343)||(38759710-38759807)
chr4 (301-384)||(48759871-48759954)
chr4 (314-371)||(5545143-5545199)
chr4 (294-364)||(5544838-5544908)
chr4 (296-383)||(25916983-25917072)
chr4 (296-372)||(35469021-35469097)
chr4 (301-341)||(26984205-26984245)
chr4 (309-350)||(34397717-34397758)
chr4 (112-172)||(48194169-48194232)
chr4 (296-328)||(34294506-34294538)
[»] chr7 (25 HSPs)
chr7 (296-383)||(28838408-28838495)
chr7 (240-383)||(20543917-20544054)
chr7 (240-382)||(17075565-17075701)
chr7 (242-372)||(22948836-22948960)
chr7 (296-372)||(11974720-11974796)
chr7 (240-383)||(17075225-17075362)
chr7 (296-351)||(32092508-32092563)
chr7 (245-351)||(42750097-42750197)
chr7 (296-370)||(28852749-28852823)
chr7 (301-370)||(11975023-11975092)
chr7 (240-371)||(5029713-5029837)
chr7 (240-383)||(18152762-18152899)
chr7 (303-383)||(23548670-23548750)
chr7 (296-372)||(44803590-44803666)
chr7 (294-372)||(10466737-10466815)
chr7 (240-372)||(32092234-32092360)
chr7 (296-372)||(20544269-20544344)
chr7 (296-383)||(44803382-44803469)
chr7 (294-352)||(23548985-23549043)
chr7 (309-383)||(49053550-49053623)
chr7 (296-348)||(28854733-28854785)
chr7 (303-351)||(12908444-12908492)
chr7 (240-372)||(49053838-49053965)
chr7 (144-173)||(1532483-1532512)
chr7 (294-339)||(16755624-16755669)
[»] chr2 (20 HSPs)
chr2 (240-373)||(2191223-2191350)
chr2 (240-372)||(3691347-3691473)
chr2 (240-383)||(21182313-21182450)
chr2 (240-383)||(2517419-2517556)
chr2 (240-383)||(24093162-24093299)
chr2 (240-382)||(21216929-21217065)
chr2 (240-382)||(21265337-21265473)
chr2 (245-377)||(3691094-3691220)
chr2 (240-383)||(21217268-21217405)
chr2 (240-383)||(21264997-21265134)
chr2 (294-371)||(10706610-10706687)
chr2 (240-383)||(7083528-7083665)
chr2 (240-383)||(21267315-21267452)
chr2 (240-372)||(32114172-32114297)
chr2 (296-383)||(2606603-2606690)
chr2 (294-372)||(39729564-39729642)
chr2 (294-372)||(24093514-24093592)
chr2 (294-372)||(32860868-32860946)
chr2 (296-351)||(32114450-32114505)
chr2 (91-132)||(6739634-6739675)
[»] chr5 (24 HSPs)
chr5 (240-383)||(31588293-31588431)
chr5 (240-371)||(87220-87345)
chr5 (240-383)||(16284280-16284417)
chr5 (294-372)||(18339127-18339205)
chr5 (240-372)||(18999598-18999724)
chr5 (240-372)||(31176513-31176639)
chr5 (240-383)||(3935641-3935778)
chr5 (296-372)||(35373504-35373580)
chr5 (296-372)||(35383296-35383372)
chr5 (240-366)||(8750324-8750444)
chr5 (294-372)||(13987336-13987415)
chr5 (240-372)||(8648023-8648149)
chr5 (240-352)||(18999372-18999478)
chr5 (240-383)||(30415431-30415567)
chr5 (294-371)||(15978444-15978519)
chr5 (301-371)||(3935451-3935518)
chr5 (296-372)||(38834737-38834812)
chr5 (293-372)||(3406818-3406897)
chr5 (294-348)||(3406513-3406567)
chr5 (306-372)||(29751724-29751789)
chr5 (306-372)||(29752390-29752455)
chr5 (296-351)||(8750066-8750121)
chr5 (240-283)||(29750883-29750926)
chr5 (296-346)||(1650060-1650110)
[»] scaffold0009 (2 HSPs)
scaffold0009 (240-383)||(108069-108206)
scaffold0009 (240-383)||(107728-107865)
[»] chr1 (24 HSPs)
chr1 (240-382)||(18180226-18180362)
chr1 (243-383)||(47541527-47541661)
chr1 (240-383)||(19895406-19895543)
chr1 (240-366)||(9880490-9880610)
chr1 (240-372)||(5683519-5683645)
chr1 (294-383)||(9880737-9880826)
chr1 (240-372)||(31436341-31436467)
chr1 (242-383)||(18179887-18180022)
chr1 (240-371)||(5683167-5683292)
chr1 (296-370)||(6751313-6751387)
chr1 (240-372)||(3591295-3591421)
chr1 (294-382)||(48155227-48155315)
chr1 (295-351)||(50359418-50359474)
chr1 (296-370)||(5172801-5172875)
chr1 (294-371)||(6751101-6751178)
chr1 (303-364)||(47541790-47541851)
chr1 (300-372)||(4288398-4288470)
chr1 (240-383)||(42723202-42723343)
chr1 (296-372)||(50359181-50359256)
chr1 (296-371)||(19895759-19895834)
chr1 (240-371)||(19976170-19976295)
chr1 (296-348)||(48155029-48155081)
chr1 (144-173)||(18470477-18470506)
chr1 (303-351)||(45664750-45664798)
[»] chr3 (23 HSPs)
chr3 (240-372)||(22814302-22814428)
chr3 (240-351)||(51471341-51471446)
chr3 (296-372)||(9217876-9217952)
chr3 (240-383)||(25770327-25770464)
chr3 (307-383)||(26741251-26741327)
chr3 (296-372)||(44504148-44504224)
chr3 (240-370)||(50732231-50732355)
chr3 (240-370)||(50780500-50780624)
chr3 (243-348)||(44504368-44504467)
chr3 (240-372)||(37172434-37172560)
chr3 (240-383)||(9218461-9218597)
chr3 (240-371)||(13637739-13637864)
chr3 (296-372)||(27013465-27013541)
chr3 (240-383)||(43933446-43933583)
chr3 (296-351)||(37172137-37172192)
chr3 (240-372)||(38485703-38485828)
chr3 (297-350)||(43933708-43933761)
chr3 (296-341)||(51755903-51755948)
chr3 (296-372)||(13637531-13637607)
chr3 (296-372)||(34743428-34743504)
chr3 (240-292)||(45728349-45728401)
chr3 (240-326)||(132063-132143)
chr3 (144-173)||(51265668-51265697)
[»] scaffold0063 (2 HSPs)
scaffold0063 (240-383)||(34798-34935)
scaffold0063 (240-371)||(35151-35276)
[»] scaffold0933 (1 HSPs)
scaffold0933 (296-383)||(547-634)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 26997953 - 26997816
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||| ||| |||||| ||||| ||||||||||||| ||||||||      ||||||| | |||||||||||||||||| ||||||||||||    
T  26997953 atatgtttttagttcttacattttgcgtccatttgaagaatagtccatacatt------tcattaattatttttaaaatcctcacattttatctccgtta 26997860  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  |||||||||||||||||||  |||||||||    
T  26997859 tcaaaattagtccctgctgttaattctctaacggaatgctgatg 26997816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 6297468 - 6297605
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||| |||||||||| |||||| || |||||||||||||||||| ||||||      |||||||||||||||||||||||||||| || |||| ||||    
T  6297468 atatgtctttagtccttacattttgcgcccctttgaagaatagttcctacatt------tcattaaatgtttttaaaatcctcacattttctctctgtta 6297561  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  |||||||||||||| ||||  |||||||||    
T  6297562 tcaaaattagtccttgctgttaattctccaacggaatgctgatg 6297605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 9800427 - 9800302
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| ||||| ||||||||||||| || |||||||||||||||| ||||      ||||||||||||||||||||||||||| |||| |||||| |||||    
T  9800427 atatatttttggtccttgcattttgcgcccctttgaagaatagtccata------tatttcattaaatgtttttaaaatccttacattttatcttcgtta 9800334  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    |||||||||||   ||||||||||||||||||    
T  9800333 tcaaaattagtttatgctgttaattctctaac 9800302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 10047485 - 10047610
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||| ||||| |||||| || || ||||||||||||| | ||||||       ||||||||||||||||||| ||||||| ||||||||||||    
T  10047485 atatgtttttaatccttacattttgcgcccttttgaagaatagtccctacatt-------cattaaatgtttttaaaattctcacattttatctccgtta 10047577  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  |||||||||||||||||||    
T  10047578 tcaaaattagtccatgctgttaattctctaacg 10047610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 383
Target Start/End: Complemental strand, 6298116 - 6297982
Alignment:
Q  243 tgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatca 342  Q
    |||||||||| ||| |||||| | ||||||||||||||||| | ||||||      |||||||||||||||||||||||||||| |||| ||||||||||    
T  6298116 tgtttttagtgcttacattttgcttccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacattttatttccgttatca 6298023  T
Q  343 aaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||  |  ||||||||||||||||  |||||||||    
T  6298022 aaattagtccctattgttaattctctaacggaatgctgatg 6297982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 9800045 - 9800182
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||| || | |||||||||||| | | ||||||      | |||||||||||||||||||||||||| | ||||||||||    
T  9800045 atatgtttttagtccttagattttgcgcctctttgaagaataatccttacatt------ttattaaatgtttttaaaatcctcacatttcatctccgtta 9800138  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  |||||||||||||||||||  |||||||||    
T  9800139 tcaaaattagtctttgctgttaattctctaacggaatgctgatg 9800182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 13315208 - 13315334
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || || ||| ||||||||| | ||||||      ||||||||||||||||||||| |||||| ||||||| ||||    
T  13315208 atatgtttttagtccttacattttgcgcccatttaaagaatagtccctacatt------tcattaaatgtttttaaaatcatcacattttatctctgtta 13315301  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||| || | |||||||||||||||||    
T  13315302 tcaaaattagccattcctgttaattctctaacg 13315334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 7344940 - 7344803
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| ||||||  | |||||||||||||| | ||||||||      | |||| |||||||||||||||||| || |||| |||||||    
T  7344940 atatgtttttagtccttacattttgtgcccctttgaagaataatccatacatt------ttattatatgtttttaaaatcctcatattttatgtccgtta 7344847  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||| ||| | || ||||||||||||||| |||||||||    
T  7344846 tcaaaattactcattactattaattctctaacgaaatgctgatg 7344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 16662224 - 16662311
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||  | |||||||||||||||||| |||||||||    
T  16662224 atttcattaaatgtttttaaaattctcacattttatctctgttattaaaattagtccctactgttaattctctaacgaaatgctgatg 16662311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 21006156 - 21006069
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||  ||  ||||||||||||||||| || |||||||||    
T  21006156 attttattaaatgtttttaaaatcctcacattttatctccgttatcaaaattgatccctgctgttaattctctaatgaaatgctgatg 21006069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 6297896 - 6297822
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 370  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || |||| |||||||||    
T  6297896 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtccttgttgttgattctctaa 6297822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 39234892 - 39234979
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||| ||||||| |||| ||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  39234892 attttattaaatattttaaaaattctcacattttatctcagttatcaaaattagtcaatgctgttaattctctaacggaatgctgatg 39234979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 16662555 - 16662430
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| ||  | ||||||||||||||| ||||||      |||||||||||||||||||| |||| || |||||||||||     
T  16662555 atatgtttttagtccttacattttgcgctcttttgaagaatagttcctacatt------tcattaaatgtttttaaaattctcatat-ttatctccgttc 16662463  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||| ||  || ||||||||||||||||    
T  16662462 tcaaaattaatccctgttgttaattctctaacg 16662430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 12489284 - 12489360
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||| |||||||||||||| ||| ||||||  ||||||||||||||||  |||||||||||||||||||    
T  12489284 atttcattaaatatttttaaaatcctcgcattttatctttgttatcaaaattagtctctgctgttaattctctaacg 12489360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 17914203 - 17914308
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||| |||| || |||||| |||| |||||||||||||| | ||||||      | |||||||||||||||||||||||||| ||||||| ||||    
T  17914203 atatgttttaagtctttacattttgcgtctctttgaagaatagtccctacatt------ttattaaatgtttttaaaatcctcacattttatctctgtta 17914296  T
Q  340 tcaaaattagtc 351  Q
    ||||||||||||    
T  17914297 tcaaaattagtc 17914308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 26243431 - 26243355
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 370  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||   | ||||||||||||||    
T  26243431 atatttcattaaatgtttttaaaatcctcacattttatctccattatcaaaatttgtccacggtgttaattctctaa 26243355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 44024289 - 44024357
Alignment:
Q  304 aaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||| || ||||||||||||||||    
T  44024289 aaatgtttttaaaatcatcacattttatccccgttatcaaaattagtcaatgttgttaattctctaacg 44024357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 17915541 - 17915466
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    |||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||  ||||||||||||| ||||    
T  17915541 attttattaaatgttttttaaatcctcacattttatctctgttatcaaaattagtctttgctgttaattctttaac 17915466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 21005779 - 21005865
Alignment:
Q  297 tttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||| ||||||||||| ||| || ||||||||||||||||||||| ||  | |||||||||||||||||| ||| |||||    
T  21005779 tttcattaaatttttttaaaatcttcatattttatctccgttatcaaaattattctttcctgttaattctctaacgaaatgttgatg 21005865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 10047914 - 10047857
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    |||| ||||||||| ||||||||||  ||| || ||||||||||||||||||||||||    
T  10047914 atatatcattaaatatttttaaaattttcatattttatctccgttatcaaaattagtc 10047857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 44148583 - 44148688
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||| | |||||||||  | ||||||||||||| | ||||||      | | |||| ||||||||||||||||||| ||  ||||||||    
T  44148583 atatgtttttagtccctacattttacgctcttttgaagaatagtccctacatt------ttaataaacgtttttaaaatcctcacatttttactccgtta 44148676  T
Q  340 tcaaaattagtc 351  Q
    |||||| |||||    
T  44148677 tcaaaaatagtc 44148688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 17157552 - 17157689
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||| ||| ||||||||| | | |||||||||||| ||||||||      ||||||||| |||||||||||||||||| |||||||  |||    
T  17157552 atatgtttttagttcttacattttacgcctcattgaagaatagtccatacatt------tcattaaatatttttaaaatcctcacattttatctctatta 17157645  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||| |||||||||||||||||||| |||||||||    
T  17157646 tcaaaattagtcactgctgttaattctctaacgaaatgctgatg 17157689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 21113085 - 21113172
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||  |||||||||||||||||||  |||||||||    
T  21113085 atttcattaaatgtttttaaaattctcacattttatctcctttatcaaaattagtctctgctgttaattctctaacggaatgctgatg 21113172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 5974017 - 5974154
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||| |  |||||||||||||||| | ||||||      |||||||||||||||||||||| ||||| |||| |||||||    
T  5974017 atatgtttttagtccttatattttgcacccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatccccacattttatttccgtta 5974110  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    | ||||||||||  || ||||||||||||||||  |||||||||    
T  5974111 ttaaaattagtccatgttgttaattctctaacggaatgctgatg 5974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 7646066 - 7645940
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| ||||||  |  ||||||||||||||| | ||||||      ||| |||||||||| ||||| ||||||| ||||||||||||    
T  7646066 atatgtttttagtccttacattttgtgctcctttgaagaatagtccttacatt------tcaataaatgttttaaaaattctcacattttatctccgtta 7645973  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  ||||||||||| |||||||    
T  7645972 tcaaaattagtccctgctgttaattttctaacg 7645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 1869507 - 1869559
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 348  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1869507 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaatta 1869559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 8710424 - 8710299
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||| |  |||||||||||||||| | ||||||      |||||||||||||||||||||| ||||| |||| | |||||    
T  8710424 atatgtttttagtccttatattttgcacccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatccccacattttat-ttcgtta 8710332  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    | ||||||||||  || ||||||||||||||||    
T  8710331 ttaaaattagtccatgttgttaattctctaacg 8710299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 14713040 - 14712964
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||||||  |||| |||| || ||||||| ||||||||||||||||  |||||||||||||||||||    
T  14713040 atttcattaaatgttttagaaatgctcatattttatctctgttatcaaaattagtctctgctgttaattctctaacg 14712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 25932419 - 25932343
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||| || |||||| ||||||| ||||||| ||||||||||||||||||||||||  ||| |||||||||||||||    
T  25932419 atttcgttcaatgttattaaaattctcacattttatctccgttatcaaaattagtctctgccgttaattctctaacg 25932343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 349
Target Start/End: Original strand, 4510194 - 4510298
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcct-cacatcttatctccgtt 338  Q
    ||||||||||||||||| ||||||||| |  ||||||||||||| | ||||||      ||||||||||||||||||||||| || || ||||||| |||    
T  4510194 atatgtttttagtccttacattttacgcctatttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctccatattttatctcggtt 4510287  T
Q  339 atcaaaattag 349  Q
    |||||||||||    
T  4510288 atcaaaattag 4510298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 326
Target Start/End: Original strand, 211447 - 211527
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacat 326  Q
    ||||||||||||||||| |||||| || |||||||||||||||| | |||      ||||||||||||| |||||||||||||||||    
T  211447 atatgtttttagtccttacattttgcgcccctttgaagaatagtccgtac------atttcattaaatgattttaaaatcctcacat 211527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 25932148 - 25932222
Alignment:
Q  309 tttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||||  ||| ||||||||||||||||||||||||  |||| ||| ||||||||||  |||||||||    
T  25932148 tttttaaaatccttgcattttatctccgttatcaaaattagtccatgctattatttctctaacggaatgctgatg 25932222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 211805 - 211678
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgttttt-aaaatcctcacatcttatctccgtt 338  Q
    ||||||||||| ||||| |||||| || |  ||||||||||||| | ||||||      ||||||||| ||||| |||||| |||||| |||||||| ||    
T  211805 atatgtttttaatccttacattttgcgcctatttgaagaatagtccctacatt------tcattaaatattttttaaaatcttcacattttatctccatt 211712  T
Q  339 atcaaaattagtcagtgctgttaattctctaacga 373  Q
    ||| |||||| ||  | ||||||||||||||||||    
T  211711 atc-aaattaatccctactgttaattctctaacga 211678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 17157917 - 17157865
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacatt 292  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | ||||||    
T  17157917 atatgtttttagtccttacattttgcgccactttgaagaatagtccctacatt 17157865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 383
Target Start/End: Original strand, 48553906 - 48554039
Alignment:
Q  244 gtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaa 343  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||||      ||||||||  |||||||||||||||||| ||||||||||||||||    
T  48553906 gtttttagtccttacattttgcgtccctttgaagaatagtccatacatt------tcattaaacctttttaaaatcctcacattttatctccgttatcaa 48553999  T
Q  344 aattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||| || |||||||||| |||||  |||||||||    
T  48554000 aattagtcattgttgttaattctttaacggaatgctgatg 48554039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 7118248 - 7118125
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || |||||||||||||||| ||||||||      |||||||||||||||||||| |||| || |||||||| |||    
T  7118248 atatgtttttagtccttacattttgcgcccctttgaagaatagtccatacatt------tcattaaatgtttttaaaattctcaaattttatctccatta 7118155  T
Q  340 tcaaaattagtcagtgctgttaattctcta 369  Q
    ||||||||||||  ||||||||||||||||    
T  7118154 tcaaaattagtccatgctgttaattctcta 7118125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 29691996 - 29691870
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||| ||||||||||||  |||||||| |||||||      || |||||||||||||| |||||||||||||||||| ||||||| ||||    
T  29691996 atatgtttttagtctttgcattttacgctcctttgaataatagtt------tttatatttcattaaatatttttaaaatcctcacattttatctctgtta 29691903  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  ||| |||||||||||||||    
T  29691902 tcaaaattagtccatgcggttaattctctaacg 29691870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 51906903 - 51906777
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| ||  ||||||||||||||| | |||||       |||||||||||||||||||||||||||| ||||||||||||    
T  51906903 atatgtttttagtccttacattttgcgctcctttgaagaatagtccctacatc------tcattaaatgtttttaaaatcctcacattttatctccgtta 51906810  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||   |||||||||||||||||||    
T  51906809 tcaaaattagtttctgctgttaattctctaacg 51906777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 35166900 - 35166824
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  35166900 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtctctgctgttaattctctaacg 35166824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 29691531 - 29691655
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||| | ||| ||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  29691531 atatgtttttagtccttatattttgcatccatttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 29691624  T
Q  340 tcaaaattagtcagtgctgttaattctctaa 370  Q
    ||||||||||||  | |||||||||||||||    
T  29691625 tcaaaattagtctctactgttaattctctaa 29691655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 3296549 - 3296654
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || |||||||||||||| | | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  3296549 atatgtttttagtccttacattttgcgcccctttgaagaatattccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 3296642  T
Q  340 tcaaaattagtc 351  Q
    ||||||||||||    
T  3296643 tcaaaattagtc 3296654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 26168053 - 26168135
Alignment:
Q  301 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||  |||||||||    
T  26168053 attaaatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgctgttaattctctaacggaatgctgatg 26168135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 30608669 - 30608599
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaatt 364  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||    
T  30608669 atatttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtcactgttgttaatt 30608599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 56106545 - 56106420
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||| || ||||||  | |||||||||||||||||| ||      ||||| |||||||||||||||||||||| ||| ||||||||||||    
T  56106545 atatgtttttagtctttacattttgtgcccctttgaagaatagttccta------tattttattaaatgtttttaaaatcctctcattttatctccgtta 56106452  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    | ||||||||||  || |||||||||||||||    
T  56106451 ttaaaattagtccctgatgttaattctctaac 56106420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 41510074 - 41510210
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||| ||||| |||||| || |||||||||||||||| | ||||||      | ||||||| ||| ||||||||||| || |||||||| |||    
T  41510074 atatatttttaatccttacattttgcgcccctttgaagaatagtccctacatt------ttattaaatatttctaaaatcctcatattttatctccctta 41510167  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 382  Q
    ||||||||||||| || ||||||||||||||||| ||||||||    
T  41510168 tcaaaattagtcactgttgttaattctctaacgaaatgctgat 41510210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 351
Target Start/End: Complemental strand, 3297028 - 3296923
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| |||||| || |||||||||||||||| | ||| ||      ||||||||||||||||||||||| |||| ||||||||||||    
T  3297028 atatatttttagtccttacattttgcgaccctttgaagaatagtccctacgtt------tcattaaatgtttttaaaatccttacattttatctccgtta 3296935  T
Q  340 tcaaaattagtc 351  Q
    ||||||||||||    
T  3296934 tcaaaattagtc 3296923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 30608301 - 30608376
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||||    
T  30608301 atttcattatatatttttaaaatcctcacattttatctccgttatcaaaattagtctctgctattaattctctaac 30608376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 34129334 - 34129247
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||   ||||||||||||| ||||  |||||||||    
T  34129334 atttcattaaatatttttaaaatcctcacattttatctctgttatcaaaattagtccaagctgttaattctccaacggaatgctgatg 34129247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 51906426 - 51906552
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||| || |||||| || | |||||||||||||| | ||| ||      ||||||||||||||||| |||||||||| ||||||||||||    
T  51906426 atatgtttttagtctttacattttgcgcctctttgaagaatagtccctacgtt------tcattaaatgtttttaatatcctcacattttatctccgtta 51906519  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  || |||||| ||| |||||    
T  51906520 tcaaaattagtccctgatgttaactctttaacg 51906552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 1791582 - 1791507
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    |||| ||||||||||||||||||| | |||| ||||||||||||| ||||||||||  ||||||||||||||||||    
T  1791582 attttattaaatgtttttaaaatctttacattttatctccgttattaaaattagtctctgctgttaattctctaac 1791507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 30953035 - 30952960
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||  || |||||||||||||||    
T  30953035 atttcattaaatgtttttaaaatcctaacattttatctcggttattaaaattagtccttgttgttaattctctaac 30952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 30048050 - 30047974
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||  || |||||||| |||||||    
T  30048050 atttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctgttgttaattatctaacg 30047974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 30062391 - 30062315
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||| ||||||||||||||| || ||||||||||||| ||||||||||  || |||||||| |||||||    
T  30062391 atttcattaaatatttttaaaatcctcatattttatctccgttattaaaattagtctctgttgttaattatctaacg 30062315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 379
Target Start/End: Original strand, 34129018 - 34129133
Alignment:
Q  258 cattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgct 357  Q
    |||||| ||||||||||||||||||| | ||      ||||| |||||| ||||||||||| |||| || |||||| |||||||||| ||||||  || |    
T  34129018 cattttgcgtccctttgaagaatagtcccta------tattttattaaacgtttttaaaattctcatattttatcttcgttatcaaagttagtctatgtt 34129111  T
Q  358 gttaattctctaacgagatgct 379  Q
    ||||||||||||||| ||||||    
T  34129112 gttaattctctaacgggatgct 34129133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 48760147 - 48760077
Alignment:
Q  298 ttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctct 368  Q
    |||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||  || ||||||||||||    
T  48760147 ttcattaaatgtttttaaaatcttcacattttatctctgttatcaaaattaatccatgttgttaattctct 48760077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 1791154 - 1791280
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||| ||  |||||||  | |||||||||||||| ||||||||      |||||||||||||| |||||||||| |  ||||  | ||||    
T  1791154 atatgtttttagtcgttaaattttacacctctttgaagaatagtccatacatt------tcattaaatgttttaaaaatcctcaaactttatacctgtta 1791247  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  || ||||||||||||||||    
T  1791248 tcaaaattagtcgatgttgttaattctctaacg 1791280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 38759710 - 38759807
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| ||||||||||||  ||||| || | ||||||||||||||  |||||||      ||||||||||||||||||||||||| || ||||||||||||    
T  38759710 atatttttttagtccttaaattttgcgcctctttgaagaatagtctatacatt------tcattaaatgtttttaaaatcctcaaattttatctccgtta 38759803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Original strand, 48759871 - 48759954
Alignment:
Q  301 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatga 384  Q
    |||||||||||||||||| ||||||| ||||||| ||  |||||||||||   ||| ||||||| ||||||| |||||||||||    
T  48759871 attaaatgtttttaaaattctcacattttatctctgtcgtcaaaattagtttctgccgttaattttctaacgcgatgctgatga 48759954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 5545199 - 5545143
Alignment:
Q  314 aaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||    
T  5545199 aaaatcctcacattttatctccgttatcaaaattagtc-ttgttgttaattctctaac 5545143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 5544838 - 5544908
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaatt 364  Q
    |||||||||||||| |||||||||| ||||||| |||||||| ||||  |||||||||  | |||||||||    
T  5544838 atatttcattaaatatttttaaaattctcacattttatctcctttattcaaattagtccatactgttaatt 5544908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 25917072 - 25916983
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgt--tatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||||||||||||||  ||| || |||||| |||  ||| |||||||||   |||| ||||||||||||||| |||||||||    
T  25917072 atttcattaaatgtttttaaaattttcatattttatcttcgtgttatgaaaattagtgtctgcttttaattctctaacgaaatgctgatg 25916983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 35469097 - 35469021
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatctt-atctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||| |||||||||||||||| || || ||||||||||||||||||| ||  || |||||||||| |||||    
T  35469097 atttcattaaa-gtttttaaaatcctcaaatttttatctccgttatcaaaattaatccatgttgttaattctttaacg 35469021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 26984205 - 26984245
Alignment:
Q  301 attaaatgtttttaaaatcctcacatcttatctccgttatc 341  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  26984205 attaaatgtttttaaaatcctcacattttatctcagttatc 26984245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 34397717 - 34397758
Alignment:
Q  309 tttttaaaatcctcacatcttatctccgttatcaaaattagt 350  Q
    ||||||||||||||| || |||||| ||||||||||||||||    
T  34397717 tttttaaaatcctcatattttatcttcgttatcaaaattagt 34397758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 48194232 - 48194169
Alignment:
Q  112 aacttattacagttaattaacttaaatatctt---tggtacgaaaaaacttaaaaccaacttgt 172  Q
    ||||| |||||||||| ||||||||| | | |   |||||||||||||||||||||||||||||    
T  48194232 aacttgttacagttaagtaacttaaagagcgtaagtggtacgaaaaaacttaaaaccaacttgt 48194169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 34294506 - 34294538
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatct 328  Q
    |||||||||||||||||||||||| ||||||||    
T  34294506 atttcattaaatgtttttaaaatcttcacatct 34294538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 28838408 - 28838495
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  28838408 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtcattggtgttaattctctaacgaaatgctgatg 28838495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 20543917 - 20544054
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||| | ||| ||||||  | |||||||||||||||| | ||||||      ||||||||| ||||||||||||||| || ||||||||||||    
T  20543917 atatgtttttaattcttacattttgtgcccctttgaagaatagtccctacatt------tcattaaatttttttaaaatcctcatattttatctccgtta 20544010  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||   |||||||||||||||||||||||| |||||    
T  20544011 tcaaaattagtttctgctgttaattctctaacgagatggtgatg 20544054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 17075701 - 17075565
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||  ||    
T  17075701 atatctttttagtccttacattttgcgcctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccacta 17075608  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 382  Q
    ||||||||||||  |||| ||||||||||||||  ||||||||    
T  17075607 tcaaaattagtccttgctattaattctctaacggaatgctgat 17075565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 372
Target Start/End: Complemental strand, 22948960 - 22948836
Alignment:
Q  242 atgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatc 341  Q
    ||||||||||||||| |||||| || ||||||||||||||||   ||||||      |||||||||||||||||||||||||||| ||||||||||||||    
T  22948960 atgtttttagtccttacattttgcgaccctttgaagaatagtctctacatt------tcattaaatgtttttaaaatcctcacattttatctccgttatc 22948867  T
Q  342 aaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||  |  ||||||| ||||||||    
T  22948866 aaaattagtctctattgttaatgctctaacg 22948836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 11974720 - 11974796
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  || ||||||||||||||||    
T  11974720 atttcattaaatgtttttaaaatcctcacattttatcttcgttatcaaaattagtctttgttgttaattctctaacg 11974796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 17075225 - 17075362
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||| || | |||||||||||||| | ||||||      |||||||| ||||||||||||||||||| ||||| ||||||    
T  17075225 atatgtttttagtccttatattttgcgccgctttgaagaatagtccctacatt------tcattaaaagtttttaaaatcctcacattttatccccgtta 17075318  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
     |||||||||||  ||| ||||||||| |||||  |||||||||    
T  17075319 acaaaattagtccttgccgttaattctttaacggaatgctgatg 17075362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 32092563 - 32092508
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32092563 atttcattaaatgtttttaaaatcctcacattttatctccgttatcaaaattagtc 32092508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 351
Target Start/End: Complemental strand, 42750197 - 42750097
Alignment:
Q  245 tttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaa 344  Q
    ||||||||| || ||||||||| |||||||||||||||| | ||||||      |||||||| ||||||||||||||||||| ||||||||||||| |||    
T  42750197 tttttagtctttacattttacgcccctttgaagaatagtccctacatt------tcattaaacgtttttaaaatcctcacattttatctccgttattaaa 42750104  T
Q  345 attagtc 351  Q
    |||||||    
T  42750103 attagtc 42750097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 28852749 - 28852823
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 370  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |  || ||||||||||||||    
T  28852749 atttcattaaatgtttttaaaatcctcacattttatccccgttatcaaaattagcctctgttgttaattctctaa 28852823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 11975092 - 11975023
Alignment:
Q  301 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 370  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||  || ||||||||||||||    
T  11975092 attaaatgtttttaaaatcctcacattttatttccgttatcaaaattagtctctgttgttaattctctaa 11975023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 5029837 - 5029713
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| ||||||||| || |||||| |||| |||||||||||||| | ||      |||||||||||||||||||||| ||||||||| ||||||||| ||    
T  5029837 atatatttttagtcgttacattttgcgtctctttgaagaatagtcccta------tatttcattaaatgtttttaaa-tcctcacattttatctccgcta 5029745  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||||||  || |||||||| ||||||    
T  5029744 tcaaaattagtccatgttgttaattatctaac 5029713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 18152762 - 18152899
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||| ||| ||| |||||| || |||||||||||||||| | ||||||      |  ||||||||| ||||||||||||||| ||||||||||||    
T  18152762 atatgttttcagttcttacattttgcgcccctttgaagaatagtccctacatt------ttgttaaatgttcttaaaatcctcacattttatctccgtta 18152855  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||    || ||||||||||||||||  |||||||||    
T  18152856 tcaaaattagcttctgttgttaattctctaacggaatgctgatg 18152899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 23548670 - 23548750
Alignment:
Q  303 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||  || ||||||||||||||||  |||||||||    
T  23548670 taaatgtttttaaaatactcacattttatctctgttatcaaaattagtctttgttgttaattctctaacggaatgctgatg 23548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 44803666 - 44803590
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||| | ||| |||||||    
T  44803666 atttcattaaatgtttttaaaattctcacattttatctccgttatcaaaattagtccatgctgatcattttctaacg 44803590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 10466815 - 10466737
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||   |||| ||||||||||||||    
T  10466815 atattttattaaatgtttttaaaatcgtcacattttatctccattatcaaaattagtttatgctattaattctctaacg 10466737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 32092234 - 32092360
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | | ||||      |||||||||||||||||||||||||||| || | |  ||||    
T  32092234 atatgtttttagtccttacattttgcgcctctttgaagaatagtccctgcatt------tcattaaatgtttttaaaatcctcacattttgtgtttgtta 32092327  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  || |||||||||| |||||    
T  32092328 tcaaaattagtctttgttgttaattctataacg 32092360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 20544344 - 20544269
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||  |||| ||||||||||||||    
T  20544344 atttcattaaatgtttttaaaatc-tcacattttatcttcgttatcaaaatcagtcgttgctattaattctctaacg 20544269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 44803382 - 44803469
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||| ||||||| ||||||||||||| | || ||||||| | ||||||||||||||  || ||||||||||||||||| ||| |||||    
T  44803382 attttattaaatatttttaaaatccttatattttatctctgctatcaaaattagtctctgttgttaattctctaacgaaatgttgatg 44803469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 23549043 - 23548985
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtca 352  Q
    |||||||||||||| ||||| ||||||||| || |||| ||||||||||||||||||||    
T  23549043 atatttcattaaatctttttgaaatcctcaaattttatttccgttatcaaaattagtca 23548985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 49053550 - 49053623
Alignment:
Q  309 tttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||| |||| || |||||| |||||||||||||||||| || ||||||||||||||||  |||||||||    
T  49053550 tttttaaaattctcatattttatcttcgttatcaaaattagtca-tgttgttaattctctaacggaatgctgatg 49053623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 28854733 - 28854785
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 348  Q
    |||| |||||||||||||||||||||||||| |||| || |||||||||||||    
T  28854733 attttattaaatgtttttaaaatcctcacattttatttcagttatcaaaatta 28854785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 12908444 - 12908492
Alignment:
Q  303 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    |||||||||||||||||||||||| |||||||||||  |||| ||||||    
T  12908444 taaatgtttttaaaatcctcacattttatctccgtttccaaatttagtc 12908492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 49053965 - 49053838
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatctta-tctccgtt 338  Q
    |||||||||| |||||| ||||||| ||| ||||||| |||| | | ||||||      |||||||| ||||||||||||||||| | ||| | | | ||    
T  49053965 atatgtttttcgtccttacattttaagtctctttgaaaaataatccctacatt------tcattaaaagtttttaaaatcctcacgttttatttttcatt 49053872  T
Q  339 atcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||  |||| ||||| ||||||||    
T  49053871 atcaaaattagtctatgctattaatgctctaacg 49053838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 1532483 - 1532512
Alignment:
Q  144 tggtacgaaaaaacttaaaaccaacttgtt 173  Q
    ||||||||||||||||||||||||||||||    
T  1532483 tggtacgaaaaaacttaaaaccaacttgtt 1532512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 16755669 - 16755624
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||| ||||||||||||||| || || |||||||||    
T  16755669 atatttcattaaatatttttaaaatcctcatattttttctccgtta 16755624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 373
Target Start/End: Original strand, 2191223 - 2191350
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || |||||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  2191223 atatgtttttagtccttacattttgcgcccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 2191316  T
Q  340 tcaaaattagtcagtgctgttaattctctaacga 373  Q
    ||||||||||||  || |||||||||| ||||||    
T  2191317 tcaaaattagtccatgttgttaattctttaacga 2191350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 3691473 - 3691347
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||| ||||| || |||||||||||||||| | ||||||      ||||||||||||||||||||| |||||| ||||||||||||    
T  3691473 atatgtttttagtccttgtattttgcgcccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcttcacattttatctccgtta 3691380  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  ||||||||||| |||||||    
T  3691379 tcaaaattagtccatgctgttaattttctaacg 3691347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 21182313 - 21182450
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || |||||||||||||||| | ||||||      ||||||||||||||||||||  |||||| ||||||| ||||    
T  21182313 atatgtttttagtccttacattttgcgcccctttgaagaatagtccttacatt------tcattaaatgtttttaaaattttcacattttatctctgtta 21182406  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  || ||||||||||||||||| |||||||||    
T  21182407 tcaaaattagtctctgttgttaattctctaacgaaatgctgatg 21182450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 2517419 - 2517556
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| |||||| |||| |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  2517419 atatatttttagtccttacattttgcgtctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 2517512  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  || |||||| ||| |||||  |||||||||    
T  2517513 tcaaaattagtctttgttgttaactctttaacggaatgctgatg 2517556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 24093162 - 24093299
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| || ||| || |||||||||||||||| | ||||||      ||||||||||||||||||||||||||||||| ||| |||||    
T  24093162 atatgtttttagtccttacactttgcgcccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacatcttctcttcgtta 24093255  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||| ||||  || ||||||||||||||||  |||||||||    
T  24093256 tcaaaatcagtccatgttgttaattctctaacggaatgctgatg 24093299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 21216929 - 21217065
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||  ||    
T  21216929 atatctttttagtccttacattttgcgcctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccacta 21217022  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 382  Q
    ||||||||||||  |||||||||||||||||||  ||||||||    
T  21217023 tcaaaattagtccttgctgttaattctctaacggaatgctgat 21217065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 21265473 - 21265337
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||  ||    
T  21265473 atatctttttagtccttacattttgcgcctctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccacta 21265380  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 382  Q
    ||||||||||||  |||||||||||||||||||  ||||||||    
T  21265379 tcaaaattagtccttgctgttaattctctaacggaatgctgat 21265337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 245 - 377
Target Start/End: Original strand, 3691094 - 3691220
Alignment:
Q  245 tttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaa 344  Q
    ||||||||||||  ||||| || || ||||||||||||||| ||||||      |||||||||||||||||||||||||||| ||||| |||||||||||    
T  3691094 tttttagtccttatattttgcgcccttttgaagaatagttcctacatt------tcattaaatgtttttaaaatcctcacattttatcaccgttatcaaa 3691187  T
Q  345 attagtcagtgctgttaattctctaacgagatg 377  Q
    |||||||  ||| ||||||||||||||| ||||    
T  3691188 attagtccctgcagttaattctctaacgggatg 3691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 21217405 - 21217268
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||| ||||||    
T  21217405 atatgtttttagtccttacattttgcgccgctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatccccgtta 21217312  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
     |||||||||||  ||| ||||||||| |||||  |||||||||    
T  21217311 acaaaattagtccctgccgttaattctttaacggaatgctgatg 21217268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 21264997 - 21265134
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || | |||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||| ||||||    
T  21264997 atatgtttttagtccttacattttgcgccgctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatccccgtta 21265090  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
     |||||||||||  ||| ||||||||| |||||  |||||||||    
T  21265091 acaaaattagtccctgccgttaattctttaacggaatgctgatg 21265134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 371
Target Start/End: Complemental strand, 10706687 - 10706610
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||||||    
T  10706687 atatttcattaaatatttttaaaatcctcacattttatctccgttatcaaaactagtccctgctgttaattctctaac 10706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 7083528 - 7083665
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||| | ||||||      ||||||||| |||||||||||||||||| |||||||| |||    
T  7083528 atatgtttttaatccttacattttacgtccatttgaagaatagtccctacatt------tcattaaatttttttaaaatcctcacattttatctccctta 7083621  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    | |||| ||||   || ||||||||||||||||  |||||||||    
T  7083622 taaaaaatagtatctgttgttaattctctaacggaatgctgatg 7083665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 21267452 - 21267315
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| ||  ||||||||||||||| | ||||||      |||||||||||||| ||||||||||||| |||| | | |||    
T  21267452 atatgtttttagtccttacatttttcgatcctttgaagaatagtccctacatt------tcattaaatgttttaaaaatcctcacattttatattcatta 21267359  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||| || |||||||||||||| |  |||||||||    
T  21267358 tcaaaattagtcactgatgttaattctctaatggaatgctgatg 21267315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 32114172 - 32114297
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| | ||||     || | |||||||||||||||||||||||||| ||||||| | ||    
T  32114172 atatgtttttagtccttacattttacg-ccctttgaagaatagtccctaca-----atct-attaaatgtttttaaaatcctcacattttatctctgata 32114264  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  | |||||||||||||||||    
T  32114265 tcaaaattagtcgctactgttaattctctaacg 32114297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 2606690 - 2606603
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||||||||||||| |||| || ||||||||| ||||||||||||||  ||||||||||||| |||||| |||||||||    
T  2606690 atttcattaaatgtttttaaaattctcatattttatctccgctatcaaaattagtccatgctgttaattctttaacgaaatgctgatg 2606603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 39729642 - 39729564
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||  || ||||||||||||||||    
T  39729642 atatttcattaaatatttttaaaatcctcacattttatctccgttatcgaaattagtctatgttgttaattctctaacg 39729564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 24093592 - 24093514
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||  |||| |||||||| |||||    
T  24093592 atattttattaaatgtttttaaaatccttacattttatctccgttatcaaaattagtccatgctcttaattctttaacg 24093514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 32860868 - 32860946
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||  | || | ||||||||||||||    
T  32860868 atatttcattaaatgtttttaaaatcctaacattttatctccgtgatcaaaattagctattgttattaattctctaacg 32860946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 351
Target Start/End: Complemental strand, 32114505 - 32114450
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    |||||||||||| |||||||||| ||||||  ||||||| ||||||||||||||||    
T  32114505 atttcattaaatatttttaaaattctcacactttatctctgttatcaaaattagtc 32114450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 6739634 - 6739675
Alignment:
Q  91 gatacagaaaaacataaaacaaacttattacagttaattaac 132  Q
    ||||||||||||| |||||| ||||||||||| |||||||||    
T  6739634 gatacagaaaaacttaaaaccaacttattacaattaattaac 6739675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 31588431 - 31588293
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccc-tttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtt 338  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||| | ||||||      ||||||||| ||||||||||||| |||| |||||||||||    
T  31588431 atatgtttttagtccttacattttgcgtcccctttgaagaatagtccctacatt------tcattaaatatttttaaaatcctaacattttatctccgtt 31588338  T
Q  339 atcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||||  |||||||||||||||||||  |||||||||    
T  31588337 atcaaaattagtccctgctgttaattctctaacggaatgctgatg 31588293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 87345 - 87220
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  |||||  |||||||||||||||||| | ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  87345 atatgtttttagtccttatattttgtgtccctttgaagaatagtccctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 87252  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||||||  || |||||||||||||||    
T  87251 tcaaaattagtctttgttgttaattctctaac 87220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 16284280 - 16284417
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| |||   |||||||||||||       || |||||| ||||||||||||||||||||||| || ||||||||||||    
T  16284280 atatgtttttagtccttacattttgcgtttttttgaagaatagtc------tttatattttattaaatgtttttaaaatcctcatattttatctccgtta 16284373  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||| || ||||||||||||||||  |||||||||    
T  16284374 tcaaaattagtcattgttgttaattctctaacggaatgctgatg 16284417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 18339127 - 18339205
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||  |||||||||||||||||||    
T  18339127 atatttcattaaatgtttttaaaatcctcacattttatctccatcatcaaaattagtccatgctgttaattctctaacg 18339205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 18999724 - 18999598
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| | ||  ||||||||||||| ||||||||      ||||||||| |||||||||||||||||| ||||||  ||||    
T  18999724 atatgtttttagtccttacattttgcttcattttgaagaatagtccatacatt------tcattaaatatttttaaaatcctcacattttatctttgtta 18999631  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||| ||| || ||||||||||||||||    
T  18999630 tcaaaattaatcattgttgttaattctctaacg 18999598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 31176513 - 31176639
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||      ||||||||||||||||||||| ||| || ||||| ||||||    
T  31176513 atatgtttttagtccttatattttgcgtccctttgaagaacagtccatacatt------tcattaaatgtttttaaaatcgtcatattttatccccgtta 31176606  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  ||||||||| ||| |||||    
T  31176607 tcaaaattagtccttgctgttaactctttaacg 31176639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 3935778 - 3935641
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| |||||||||  ||||||||||||| | | ||||||      ||||||| |||||||||||||||||||| ||||||  ||||    
T  3935778 atatatttttagtcctttcattttacgctcctttgaagaataatccctacatt------tcattaattgtttttaaaatcctcacattttatctttgtta 3935685  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    | ||||||||||  |||||||||||||||||||| ||| |||||    
T  3935684 ttaaaattagtctctgctgttaattctctaacgaaatgttgatg 3935641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 35373504 - 35373580
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||| ||||||||||||||| || ||||| ||||||| ||||||||||| |||||||||||||||||||    
T  35373504 atttcattaaatatttttaaaatcctcatattttatccccgttattaaaattagtcactgctgttaattctctaacg 35373580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 35383296 - 35383372
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||  ||||||||||| |||||||    
T  35383296 atttcattaaatgtttttaaaatcctcatattttatccccgttatcaaaattagtccatgctgttaattttctaacg 35383372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 366
Target Start/End: Complemental strand, 8750444 - 8750324
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| |||  |||||||||||||| | ||||||      | ||||||||| ||||||||||||| || ||||||||||||    
T  8750444 atatgtttttagtccttacattttgcgtttctttgaagaatagtccctacatt------ttattaaatgtgtttaaaatcctcatattttatctccgtta 8750351  T
Q  340 tcaaaattagtcagtgctgttaattct 366  Q
    ||||||||||||  || ||||||||||    
T  8750350 tcaaaattagtccatgttgttaattct 8750324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 13987336 - 13987415
Alignment:
Q  294 atatttcattaaatgttttt-aaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||  |||||||||||||||||||    
T  13987336 atatttcattaaatgttttttaaaattctcacattttatctccgttattaaaattagtctctgctgttaattctctaacg 13987415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 8648149 - 8648023
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||| ||||||||||| |||||| ||||| || ||||||||||   ||||||      ||||||||| |||||||||||||||||| || |||||||||    
T  8648149 atatgattttagtccttacattttgcgtcctttggaagaatagtctttacatt------tcattaaatatttttaaaatcctcacattttttctccgtta 8648056  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  || |||||||||| |||||    
T  8648055 tcaaaattagtctatgttgttaattctttaacg 8648023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 18999372 - 18999478
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| |   | ||||||||||||| ||||||||      ||||||||| |||||||||||||| ||| ||||||||||||    
T  18999372 atatgtttttagtccttacattttgcactcttttgaagaatagtccatacatt------tcattaaatatttttaaaatcctctcattttatctccgtta 18999465  T
Q  340 tcaaaattagtca 352  Q
    |||||||||||||    
T  18999466 tcaaaattagtca 18999478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 30415567 - 30415431
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||| ||||||||||| |||||||||  |||| |||||||||| | ||||||      ||||||| |||||||||||||||||||| || |||||||||    
T  30415567 atatggttttagtccttacattttacgctccttcgaagaatagtccctacatt------tcattaa-tgtttttaaaatcctcacattttgtctccgtta 30415475  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||| |   ||||||||||||| ||||  |||||||||    
T  30415474 tcaaaattaggctcagctgttaattctccaacggaatgctgatg 30415431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 15978444 - 15978519
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||| ||||||||||| || |||||||||| ||||    
T  15978444 atatttcattaaatgtttttaaaa--ctcacattttatctcggttattaaaattagtcattgttgttaattctttaac 15978519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 3935451 - 3935518
Alignment:
Q  301 attaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||||    ||||||||||||||||    
T  3935451 attaaatgtttttaaaatcctcacattttatctccattatcaatattagtc---tctgttaattctctaac 3935518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 38834812 - 38834737
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||||||||| | ||||| | ||||| |||||| |||||||||  |||||||||||||||||||    
T  38834812 atttcattaaatgtttttaaaattcacacatttgatctctgttatc-aaattagtctctgctgttaattctctaacg 38834737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 372
Target Start/End: Complemental strand, 3406897 - 3406818
Alignment:
Q  293 aatatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||| ||||||| |||||||||| ||||||| ||||||| ||||||||||||||||  || | |||||| |||||||    
T  3406897 aatattttattaaatatttttaaaattctcacattttatctctgttatcaaaattagtccctgatattaattttctaacg 3406818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 3406513 - 3406567
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 348  Q
    |||||||||||||||||||||||||||| | || ||||||| |||||||||||||    
T  3406513 atatttcattaaatgtttttaaaatccttatattttatctctgttatcaaaatta 3406567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 29751724 - 29751789
Alignment:
Q  306 atgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||  |||  ||||||||||||||    
T  29751724 atgtttttaaaattctcacattttatctc-gttatcaaaattagtccctgcgcttaattctctaacg 29751789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 29752390 - 29752455
Alignment:
Q  306 atgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||  |||  ||||||||||||||    
T  29752390 atgtttttaaaattctcacattttatctc-gttatcaaaattagtccctgcgcttaattctctaacg 29752455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 8750066 - 8750121
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    |||||||||||| ||||||||||| | || | |||||| |||||||||||||||||    
T  8750066 atttcattaaatatttttaaaatcgtaacgttttatcttcgttatcaaaattagtc 8750121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 29750883 - 29750926
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagt 283  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||    
T  29750883 atatgttttcagtctttgcattttgcgtccctttgaagaatagt 29750926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 1650060 - 1650110
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaat 346  Q
    |||| |||||||||||||||||| || | || |||||||||||||||||||    
T  1650060 attttattaaatgtttttaaaattcttatattttatctccgttatcaaaat 1650110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 108206 - 108069
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| || || ||||||||||  ||| ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  108206 atatgtttttagtccttacattttgcgcccttttgaagaattattcctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 108113  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  ||||||||||||||||| |  |||||||||    
T  108112 tcaaaattagtctctgctgttaattctctaatggaatgctgatg 108069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 107728 - 107865
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||| |||| || ||| ||  ||||||||||||||| | ||||||      ||| ||||| |||||||||||||||||| ||||||||||||    
T  107728 atatgtttttagaccttacactttgcgctcctttgaagaatagtccctacatt------tcaataaatatttttaaaatcctcacattttatctccgtta 107821  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||| |||||  || ||||||||||||||||  |||||||||    
T  107822 tcaaaaatagtccatgttgttaattctctaacggaatgctgatg 107865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 18180362 - 18180226
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||| || ||  ||||| || | |||||||||||||| ||||||||      | ||||||||||||||||||||||| || ||||||||||||    
T  18180362 atatgtttttaatctttatattttgcgccactttgaagaatagtccatacatt------ttattaaatgtttttaaaatcctcatattttatctccgtta 18180269  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgat 382  Q
    |||||||||||||||| ||||||||||||||||  ||||||||    
T  18180268 tcaaaattagtcagtggtgttaattctctaacggaatgctgat 18180226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 383
Target Start/End: Original strand, 47541527 - 47541661
Alignment:
Q  243 tgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatca 342  Q
    |||||||||||||| ||||||| |||||||||||||||||| | ||      |||||||||||||||||||||||||||||||| |||| | | ||||||    
T  47541527 tgtttttagtccttacattttatgtccctttgaagaatagtcccta------tatttcattaaatgtttttaaaatcctcacattttatattcattatca 47541620  T
Q  343 aaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||| ||  || ||||||||||||||||  |||||||||    
T  47541621 aaattaatccctgttgttaattctctaacggaatgctgatg 47541661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 19895406 - 19895543
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| ||||||| |  | ||||||||||||| |||||||| |      ||||||||||||||||| |||||||| ||||||||||||    
T  19895406 atatgtttttagtccttacattttatgctcgtttgaagaatagtccatacattta------attaaatgtttttaaaaccctcacattttatctccgtta 19895499  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  | ||||||||||| |||||  |||||||||    
T  19895500 tcaaaattagtctatactgttaattctttaacggaatgctgatg 19895543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 366
Target Start/End: Original strand, 9880490 - 9880610
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| | ||||||||||||| |||   ||||||      |||||||||||||||||||||||||||| |||||| |||||    
T  9880490 atatgtttttagtccttacattttgcatccctttgaagaaaagtctctacatt------tcattaaatgtttttaaaatcctcacattttatcttcgtta 9880583  T
Q  340 tcaaaattagtcagtgctgttaattct 366  Q
    ||||||||||||| || ||||||||||    
T  9880584 tcaaaattagtcactgttgttaattct 9880610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 5683645 - 5683519
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||||||||  ||||||||||||| | ||||||      ||||||||| ||||||||||||||  || ||||||||| ||    
T  5683645 atatgtttttagtccttatattttacgtctttttgaagaatagtccctacatt------tcattaaatatttttaaaatcctcgtattttatctccggta 5683552  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||| ||||||||||| |||||||    
T  5683551 tcaaaattagtcactgctgttaattttctaacg 5683519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 9880826 - 9880737
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||  |||||||||||||||||||  |||||||||    
T  9880826 atattttattaaatgtttttaaaattctcacattttatctctgttatcaaaattagtccctgctgttaattctctaacggaatgctgatg 9880737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 31436467 - 31436341
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||| ||||||||||| ||||||  |||| |||||||||||||     || || ||||| ||||||||||||||||||  |||||| ||||||||||||    
T  31436467 atatgattttagtccttacattttgtgtccttttgaagaatagt-----cacta-tattttattaaatgtttttaaaattatcacattttatctccgtta 31436374  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  |||||||||||||||||||    
T  31436373 tcaaaattagtctctgctgttaattctctaacg 31436341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 383
Target Start/End: Original strand, 18179887 - 18180022
Alignment:
Q  242 atgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatc 341  Q
    ||||||||||||||| |||||| |  ||||||||| |||||| | ||      ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18179887 atgtttttagtccttacattttgcacccctttgaaaaatagtcctta------tatttcattaattgtttttaaaatcctcacattttatctccgttatc 18179980  T
Q  342 aaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||  | ||| ||||| |||||||  |||||||||    
T  18179981 aaaattagtctctactgctaattttctaacggaatgctgatg 18180022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 371
Target Start/End: Original strand, 5683167 - 5683292
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||| ||||| |||||| |||| ||||||| |||||| | ||||||      ||||||||||| |||||||||||||||| |||||| | |||    
T  5683167 atatgtttttaatccttacattttgcgtctctttgaaaaatagtccctacatt------tcattaaatgtatttaaaatcctcacattttatcttcatta 5683260  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||||||  |||||||| |||||||||    
T  5683261 tcaaaattagtccctgctgttatttctctaac 5683292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 6751387 - 6751313
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 370  Q
    |||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||  |||||||||||||||||    
T  6751387 atttcattaaatttttttaaaatcctcacattttatctttgttatcaaaattagtctctgctgttaattctctaa 6751313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 3591421 - 3591295
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| |||||| ||  | ||||||||||||| ||||||||      | |||||||||||||||||||||||||| |||||||| |||    
T  3591421 atatatttttagtccttacattttgcgctcatttgaagaatagtccatacatt------ttattaaatgtttttaaaatcctcacattttatctccatta 3591328  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    | ||||||||||  |||||| |||| |||||||    
T  3591327 taaaaattagtccctgctgtaaattatctaacg 3591295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 382
Target Start/End: Complemental strand, 48155315 - 48155227
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgat 382  Q
    |||||||||||||||||||||||||| |||||| ||||||  ||||||||||||||||  || |||||||||| |||||  ||||||||    
T  48155315 atatttcattaaatgtttttaaaatcttcacattttatctatgttatcaaaattagtccttgttgttaattctttaacggaatgctgat 48155227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 50359474 - 50359418
Alignment:
Q  295 tatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  50359474 tatttcattaaatgtttttaaaatcctcacattttatctctgttatcaaaattagtc 50359418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 5172801 - 5172875
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaa 370  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||| ||||||  || ||||||||||||||    
T  5172801 atttcattaaatgtttttaaaatccttacattttatctacgttatcaaatttagtccttgttgttaattctctaa 5172875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 6751101 - 6751178
Alignment:
Q  294 atatttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||||||||||||| |||||| || ||| ||||||||||||||||||||||||   | |||||||||||||||    
T  6751101 atatttcattaaatgttttaaaaatcatcgcattttatctccgttatcaaaattagtccccgatgttaattctctaac 6751178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 47541851 - 47541790
Alignment:
Q  303 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaatt 364  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  || ||||||||    
T  47541851 taaatgtttttaaaatcctcacattttatctccgttatcaaaattagtccttgttgttaatt 47541790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 4288470 - 4288398
Alignment:
Q  300 cattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||||| ||  ||||||||||||| |||||    
T  4288470 cattaaatgtttttaaaatcctcacattttatattcgttatcaaaattaatccatgctgttaattctttaacg 4288398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 42723343 - 42723202
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||| |||||  ||||| ||  ||||| ||||||| |||||| |||  || || |||||||||||||||||||||||||| |||| |||||||    
T  42723343 atatgtttttaatccttatattttgcgctcctttaaagaataattcatatatt--taatttattaaatgtttttaaaatcctcacattttatatccgtta 42723246  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
     ||||||||||   || |||||||| ||||| |  |||||||||    
T  42723245 gcaaaattagtttatgttgttaattatctaatggaatgctgatg 42723202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 50359181 - 50359256
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||||||||| ||||| |||||| |||| ||||||||||||||||| |  |||||||||||||||||||    
T  50359181 atttcattaaatgttttttaaatcttcacattttatttccgttatcaaaattag-ctctgctgttaattctctaacg 50359256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 371
Target Start/End: Complemental strand, 19895834 - 19895759
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaac 371  Q
    |||| |||||||||||||||||| |||| || |||||| |||||||||||||||||  || |||||||||||||||    
T  19895834 attttattaaatgtttttaaaattctcatattttatcttcgttatcaaaattagtctttgttgttaattctctaac 19895759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 371
Target Start/End: Original strand, 19976170 - 19976295
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||| || |||||| ||   |||||||||||||||| ||      | ||| |||||||||||||||||||| ||||| |||||||  |||    
T  19976170 atatgtttttagtcgttacattttgcgcttctttgaagaatagttctta------ttttttattaaatgtttttaaaatccccacattttatctctatta 19976263  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    ||||||||| ||  || |||||||| ||||||    
T  19976264 tcaaaattaatccttgttgttaattatctaac 19976295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 48155029 - 48155081
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaatta 348  Q
    |||| ||||||||||||||||||||||| || ||||||||| |||||||||||    
T  48155029 attttattaaatgtttttaaaatcctcatattttatctccgatatcaaaatta 48155081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 173
Target Start/End: Original strand, 18470477 - 18470506
Alignment:
Q  144 tggtacgaaaaaacttaaaaccaacttgtt 173  Q
    ||||||||||||||||||||||||||||||    
T  18470477 tggtacgaaaaaacttaaaaccaacttgtt 18470506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 45664750 - 45664798
Alignment:
Q  303 taaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    |||||||||||||||||| ||||| ||  |||||||||||||| |||||    
T  45664750 taaatgtttttaaaatccccacatttttactccgttatcaaaaatagtc 45664798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 22814302 - 22814428
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||| | ||| |||||| || |||||||||||||||| ||||||||      |||||||||||||||||||||||||||| |||||| |||||    
T  22814302 atatgtttttaattcttacattttgcgcccctttgaagaatagtccatacatt------tcattaaatgtttttaaaatcctcacattttatcttcgtta 22814395  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  |||| |||||| |||||||    
T  22814396 tcaaaattagtccctgctattaattttctaacg 22814428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 240 - 351
Target Start/End: Original strand, 51471341 - 51471446
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||| ||||| ||| |||||| ||||||||||||||||||||  ||||||      |||||||||||||||||||||||||||| ||||||||||||    
T  51471341 atatgttcttagttcttacattttgcgtccctttgaagaatagtttctacatt------tcattaaatgtttttaaaatcctcacattttatctccgtta 51471434  T
Q  340 tcaaaattagtc 351  Q
    ||||||||||||    
T  51471435 tcaaaattagtc 51471446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 9217876 - 9217952
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||| |||||    
T  9217876 atttcattaaatgtttttaaaatcctcacattttatctccgttattaaaattagtcactgttgttaattctttaacg 9217952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 25770327 - 25770464
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| ||||||   ||||||||||||||||| | ||||||      |||||||||||||||| ||||||||||| |||||  |||||    
T  25770327 atatgtttttagtccttacattttgtatccctttgaagaatagtccctacatt------tcattaaatgtttttagaatcctcacattttatcatcgtta 25770420  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||| ||  || ||||||||||||||||  |||||||||    
T  25770421 tcaaaattaatccatgttgttaattctctaacggaatgctgatg 25770464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 26741327 - 26741251
Alignment:
Q  307 tgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||  |||||||||    
T  26741327 tgtttttaaaatcctcacattttatctctgttatcaaaattagtcattgctgttaattctctaacggaatgctgatg 26741251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 44504148 - 44504224
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  || ||||||||||||||||    
T  44504148 atttcattaaatatttttaaaatcctcacattttatctccgttatcaaaattagtccatgttgttaattctctaacg 44504224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 50732231 - 50732355
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||  ||||| |||||| ||  |||||||| |||||| ||||||||      ||||||||| |||||||||||||| ||| ||||||||||||    
T  50732231 atatgttttttatccttacattttgcgctcctttgaaaaatagtccatacatt------tcattaaatatttttaaaatcctcgcattttatctccgtta 50732324  T
Q  340 tcaaaattagtcagtgctgttaattctctaa 370  Q
    ||||||||||||  |||||||||||||||||    
T  50732325 tcaaaattagtccctgctgttaattctctaa 50732355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 370
Target Start/End: Complemental strand, 50780624 - 50780500
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||  ||||| |||||| ||  |||||||| |||||| ||||||||      ||||||||| |||||||||||||| ||| ||||||||||||    
T  50780624 atatgttttttatccttacattttgcgctcctttgaaaaatagtccatacatt------tcattaaatatttttaaaatcctcgcattttatctccgtta 50780531  T
Q  340 tcaaaattagtcagtgctgttaattctctaa 370  Q
    ||||||||||||  |||||||||||||||||    
T  50780530 tcaaaattagtccctgctgttaattctctaa 50780500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 44504467 - 44504368
Alignment:
Q  243 tgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgttatca 342  Q
    |||||||||||||| |||||| |  |||||||||||||||| | ||||||      |||||||||||||||||||||||||||| |||||||||||||||    
T  44504467 tgtttttagtccttacattttgcacccctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacattttatctccgttatca 44504374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 37172560 - 37172434
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||| ||||||| |||||||||||||||||||||| ||| |||| |      | |||||||||||||||||||  ||||| |||||||  |||    
T  37172560 atatatttttaatccttgcgttttacgtccctttgaagaataattcctacact------ttattaaatgtttttaaaatctccacattttatctctatta 37172467  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  |||||||||||||||||||    
T  37172466 tcaaaattagtccatgctgttaattctctaacg 37172434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 383
Target Start/End: Complemental strand, 9218597 - 9218461
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||| || |||||| ||  ||||||||||||||| | ||      ||||||||||||||||||||||||| |||||| |||||| |||||    
T  9218597 atatgtttttagtcattacattttgcgctcctttgaagaatagtcccta------tatttcattaaatgtttttaaaatcatcacattttatcttcgtta 9218504  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    || |||||||||  || ||||||||||||||||  |||||||||    
T  9218503 tc-aaattagtctctgttgttaattctctaacggaatgctgatg 9218461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 13637864 - 13637739
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||| |||||||| |||||| || ||||||||||||||||   ||||||      ||||||||| |||||||||||||||||| ||||||||||||    
T  13637864 atatgtttctagtccttacattttgcgcccctttgaagaatagtctctacatt------tcattaaatatttttaaaatcctcacattttatctccgtta 13637771  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    |||||| |||||  || |||||||||| ||||    
T  13637770 tcaaaactagtccttgttgttaattctttaac 13637739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 27013465 - 27013541
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||||  || ||||||||||||||||    
T  27013465 attttattaaatgtttttaaaatccttacattttatctccgttatcacaattagtctatgttgttaattctctaacg 27013541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 43933446 - 43933583
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||| |||||||||||| ||||||  | || ||||||||||||| | ||||||      ||||||||| |||||||||||||||||| |||||| |||||    
T  43933446 atatatttttagtccttacattttgtgcccgtttgaagaatagtccctacatt------tcattaaatatttttaaaatcctcacattttatcttcgtta 43933539  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  || |||||||||| ||| |  |||||||||    
T  43933540 tcaaaattagtccctgttgttaattctataatggaatgctgatg 43933583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 351
Target Start/End: Original strand, 37172137 - 37172192
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtc 351  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  37172137 atttcattaaatgtttttaaaatcctcacagtttatctccgttatcaaaattagtc 37172192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 38485703 - 38485828
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||| ||||||||||| ||||||  | | |||||||||||||| ||||||||      | |||| ||||||||||||||||  ||| || |||||||||    
T  38485703 atatgattttagtccttacattttgtgcctctttgaagaatagtccatacatt------ttattatatgtttttaaaatccttgcatttt-tctccgtta 38485795  T
Q  340 tcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||  ||||||||||||| |||||    
T  38485796 tcaaaattagtctttgctgttaattctttaacg 38485828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 43933761 - 43933708
Alignment:
Q  297 tttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagt 350  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||||||||||    
T  43933761 tttcattaaatgtttttaaaatcctcatattttatctctgttatcaaaattagt 43933708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 51755948 - 51755903
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatc 341  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  51755948 atttcattaaatgtttttaaaatcctcacattttatctccgttatc 51755903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 13637531 - 13637607
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    |||||||||||| ||||||||||| ||| || |||||| |||||||||||||||||  | | |||||||||||||||    
T  13637531 atttcattaaatatttttaaaatcttcatattttatcttcgttatcaaaattagtctttaccgttaattctctaacg 13637607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 34743504 - 34743428
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacg 372  Q
    ||||||||||||||||| ||||||||||||| |||| |  ||||||||||||||||  ||| ||||||||| |||||    
T  34743504 atttcattaaatgttttaaaaatcctcacattttatatatgttatcaaaattagtctctgcggttaattctttaacg 34743428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 45728401 - 45728349
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacatt 292  Q
    ||||||||||||||||| ||||||  |||||||||||||||||| ||||||||    
T  45728401 atatgtttttagtccttacattttgtgtccctttgaagaatagtccatacatt 45728349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 132143 - 132063
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacat 326  Q
    |||||| |||||||||| |||||| |   ||||||||||||||| | ||||||      ||||||||||||||||||||||||||||    
T  132143 atatgtatttagtccttacattttgcactcctttgaagaatagtccttacatt------tcattaaatgtttttaaaatcctcacat 132063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 173
Target Start/End: Complemental strand, 51265697 - 51265668
Alignment:
Q  144 tggtacgaaaaaacttaaaaccaacttgtt 173  Q
    ||||||||||||||||||||||||||||||    
T  51265697 tggtacgaaaaaacttaaaaccaacttgtt 51265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 34798 - 34935
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    |||||||||||||||||  ||||| ||||  |||||| ||| || ||||||||      |||||||||||||||||| | ||||||| ||||||||||||    
T  34798 atatgtttttagtccttatattttgcgtctatttgaataatggtccatacatt------tcattaaatgtttttaaagtactcacattttatctccgtta 34891  T
Q  340 tcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    ||||||||||||  |||| |||||| ||||||| ||||||||||    
T  34892 tcaaaattagtctctgctattaattttctaacgggatgctgatg 34935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 35276 - 35151
Alignment:
Q  240 atatgtttttagtccttgcattttacgtccctttgaagaatagttcatacattaatatttcattaaatgtttttaaaatcctcacatcttatctccgtta 339  Q
    ||||||||||||||||| |||||| |||||||||||||||||||   ||||||      | ||| |||||||||||||||||||||| ||||||| ||||    
T  35276 atatgtttttagtccttacattttgcgtccctttgaagaatagtctctacatt------ttattgaatgtttttaaaatcctcacattttatctcggtta 35183  T
Q  340 tcaaaattagtcagtgctgttaattctctaac 371  Q
    | |||||||||   |||| |||| ||||||||    
T  35182 tgaaaattagtttatgctcttaactctctaac 35151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 547 - 634
Alignment:
Q  296 atttcattaaatgtttttaaaatcctcacatcttatctccgttatcaaaattagtcagtgctgttaattctctaacgagatgctgatg 383  Q
    |||||||||||||||||||||||  |||||| |||| |  ||||||||||||||||  || ||||| || |||||||  |||||||||    
T  547 atttcattaaatgtttttaaaattttcacattttatttttgttatcaaaattagtctatgttgttatttttctaacggaatgctgatg 634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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