View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15767_low_9 (Length: 278)
Name: NF15767_low_9
Description: NF15767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15767_low_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 18718831 - 18719096
Alignment:
| Q |
15 |
caaaggggctaacttgcttgttgattcttctggtgttgttaagcttgctgaaccatttttggagaaagctactcaatagtttaaagttgttcacaccatc |
114 |
Q |
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| T |
18718831 |
caaaggggctaacttgcttgttgattcttctggtgttgttaagcttgctgaaccctttttggagaaagctactcaatggtttaaagttgttcacaccatc |
18718930 |
T |
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| Q |
115 |
aatttcattaatatactaagatcttttgtggttacttctaacttttcatgtgacacaatcc--atatgcttgcacaatcaagatatctaagcttcagaac |
212 |
Q |
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| T |
18718931 |
aatttcattgatatactaagatcttttatggttacttctaacttttcatgtgacacaatccatatatgcttgcacaatcaagatatctaagcttcagaac |
18719030 |
T |
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| Q |
213 |
tctcagatgttacgatccagccgggtttctagttgggttgagctcatgtttgcaaaatcagacctc |
278 |
Q |
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| T |
18719031 |
tctcagatgttacaatccaggcgggtttctagttgggttgagctcatgtttgcaaaatcagacctc |
18719096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 32380787 - 32380679
Alignment:
| Q |
58 |
cttgctgaaccatttttggagaaagctactcaatagtttaaagttgttcacaccatcaatttcattaatatactaagatcttttgtggttacttctaact |
157 |
Q |
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| T |
32380787 |
cttgctgaactatttttggagaaagctaatcaatggtttgaagttgttcacgccatcaattgcattgatgtactaagatcttttgctgttacttccagct |
32380688 |
T |
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| Q |
158 |
tttcatgtg |
166 |
Q |
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| T |
32380687 |
tttcatgtg |
32380679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 6624976 - 6624926
Alignment:
| Q |
15 |
caaaggggctaacttgcttgttgattcttctggtgttgttaagcttgctga |
65 |
Q |
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| T |
6624976 |
caaaggggctaacttgcttgttgattcttctggtgttgttaagcttgctga |
6624926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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