View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_high_11 (Length: 280)
Name: NF15768_high_11
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_high_11 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 15710 - 15966
Alignment:
| Q |
9 |
agcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaa |
108 |
Q |
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| T |
15710 |
agcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaa |
15809 |
T |
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| Q |
109 |
aatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatc |
208 |
Q |
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| T |
15810 |
actatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatc |
15909 |
T |
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| Q |
209 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcatag |
265 |
Q |
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| T |
15910 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcatag |
15966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 25878 - 26134
Alignment:
| Q |
9 |
agcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaa |
108 |
Q |
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| T |
25878 |
agcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaa |
25977 |
T |
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| Q |
109 |
aatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatc |
208 |
Q |
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| T |
25978 |
actatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatc |
26077 |
T |
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| Q |
209 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcatag |
265 |
Q |
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| T |
26078 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcatag |
26134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 36044 - 36300
Alignment:
| Q |
9 |
agcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaa |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36044 |
agcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaa |
36143 |
T |
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| Q |
109 |
aatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatc |
208 |
Q |
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| T |
36144 |
actatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatc |
36243 |
T |
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| Q |
209 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcatag |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36244 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcatag |
36300 |
T |
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