View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15768_high_14 (Length: 251)
Name: NF15768_high_14
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 43858057 - 43857863
Alignment:
| Q |
1 |
ctcacttctctggttttttaatgtagtttcaatttctattcttttgtcgtcaattgttttgagttgtgatgttgtatgtcaataagttgcatgtgcactt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43858057 |
ctcacttttctggttttttaatgtagtttcaatttctattcttttgtcgtcaattgtattgagttgtgatgttgtatgtcaataagttgcatgtgcactt |
43857958 |
T |
|
| Q |
101 |
tgtgagattcttataagtattcaaatttcaagtaataaataaaggtcttgttttatgatgcaaatttccactattacctcattcatttagcacca |
195 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43857957 |
tgtgagattcttataagtgttcaaatttcaagtaataaataaagctcttgttttatgatgcaaatttccactattacctcattcatttagcacca |
43857863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 43859682 - 43859505
Alignment:
| Q |
52 |
aattgttttgagttgtgatgttgtatgtcaataagttgcatgtgcactttgtgagattcttataagtattcaaatttcaagtaataaataaaggtcttgt |
151 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
43859682 |
aattgttttgggttgtgaagttgtatgtcaataagttgcaaatgcgctttgtgagattctta--agtattcaaatt-caagtaa--aataaaggttgtgt |
43859588 |
T |
|
| Q |
152 |
tttatgatgcaaatttccactattacctcattcatttagcaccatttaatttgtgttctctatgaatattcagagtggttact |
234 |
Q |
| |
|
|||||||| | ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43859587 |
tttatgatttcagtttcctcatttacctcattcatttagaaccatttaatttgtgttctctatgaatattcagagtggttact |
43859505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University