View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_high_5 (Length: 459)
Name: NF15768_high_5
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 5054769 - 5055000
Alignment:
| Q |
15 |
gtgataagaaatttcgtgtttaactgattagacgtatgattaatcgtttgtgcttgattcattgtatgtttaacttataagat---gaaggccaacttgc |
111 |
Q |
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| T |
5054769 |
gtgatacgaaatttcgtgtttagctgattagatgtatgatcaatcgtttgtgcttgattcgtcgtatgtttaacttataagatcatgatggccaacttgc |
5054868 |
T |
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| Q |
112 |
acgtgtgacaatgattctctttttatttaagtgattacacccacaaaagatcatgtttctcgtctacgggttcttagactacaccaaagaacacccattg |
211 |
Q |
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| T |
5054869 |
acgtgtgacaatgattccctttttatttaagtgattgcacccacaaaagatcatgtttctcatctgcgggttcttagactacaccaaagaacacccagtg |
5054968 |
T |
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| Q |
212 |
ttgaaggatgaactactatctaagaagacatg |
243 |
Q |
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| T |
5054969 |
ttgaaggatgaactactatctaagaagacatg |
5055000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 5055049 - 5055197
Alignment:
| Q |
292 |
cttgtttgattcatgtgtacaaaatatgatttacaatgggtatttacagacttagaatacctaagcaacctaaattaacactgtttgccatatttttggt |
391 |
Q |
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| T |
5055049 |
cttgtttgattgatgtgtacaaaatatgatttacaatgggtatttacagacttagaatacctaagcaacctacattaacactgtttgccatatttttggt |
5055148 |
T |
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| Q |
392 |
ccattaactatcatattatatcatgtaatatcaagactaacattactac |
440 |
Q |
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| T |
5055149 |
ccattaactatcatattacatcatgtaatatcaagactaacatgactac |
5055197 |
T |
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