View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_high_8 (Length: 353)
Name: NF15768_high_8
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 27 - 335
Target Start/End: Complemental strand, 53941827 - 53941517
Alignment:
| Q |
27 |
gagcagctacatttccatggctcaaagnnnnnnnn--gggaaaatgggatacgcaaacatcatatcaaagtaagattgattatttaaaaggttgtgggag |
124 |
Q |
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| T |
53941827 |
gagcagctacatttccatggctcaaagaaaaaaaaaagggaaaatgggatacgcaaacatcatatcaaagtaagattgattatttaaaaggttgtgggaa |
53941728 |
T |
|
| Q |
125 |
ctatgaaccacattatgtgaatcaccttgaaacttcacctccgaaaacctcatatctatagaaaacataattgccaacctttcttttgaagaagaacata |
224 |
Q |
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| T |
53941727 |
ctatgaaccacattatgtgaatcaccttgaaacttcacctccgaaaacctcatatctttagaaaacataattgccaacctttcttttgaagaagaacata |
53941628 |
T |
|
| Q |
225 |
attgtcaactttacattcaaagttttagcaatatcataattcggaaagttttcgacgcaccaagtggcaggtgttgtaacatatccatctgaatatttaa |
324 |
Q |
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| T |
53941627 |
attgtcaactttacattcaaagttttagctatatcataattcggaaagttttcgacacaccaagtggcaggtgttgtaacatatccatctgaatatttaa |
53941528 |
T |
|
| Q |
325 |
taaccacatat |
335 |
Q |
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||||||||||| |
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| T |
53941527 |
taaccacatat |
53941517 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 55446192 - 55446095
Alignment:
| Q |
85 |
catatcaaagtaagattgattatttaaaaggttgtgggagctatgaaccacattatgtgaatcaccttgaaacttcacctccgaaaacctcatatcta |
182 |
Q |
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|||| |||||||||||||||||||| |||||||||| | | | |||||||||| | || ||||||| |||| |||||| |||||| |||||||| |
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| T |
55446192 |
cataccaaagtaagattgattatttgaaaggttgtgaaaacgacgaaccacatttagggagtcaccttcaaacatcacctagaaaaaccccatatcta |
55446095 |
T |
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