View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15768_low_1 (Length: 770)
Name: NF15768_low_1
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 204 - 753
Target Start/End: Original strand, 3702043 - 3702591
Alignment:
| Q |
204 |
gtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaagatgagttgt |
303 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3702043 |
gtgctccttggttt-aaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaaggtacaaaagatgagttgt |
3702141 |
T |
|
| Q |
304 |
gtgagtaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgagtaaac |
403 |
Q |
| |
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| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3702142 |
gcgagcaacaatatgagaggttcaaacagttggtggtagaagccaagacactgcttggaaaggcatgtcaagatttaggagatgagttgtgtgagtaaac |
3702241 |
T |
|
| Q |
404 |
attgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagta |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702242 |
attgtgagaactttgccaccagaaatttgttcaatgatcaaatggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagta |
3702341 |
T |
|
| Q |
504 |
caatggtagcaaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccgctactaccttgcatttggat |
603 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702342 |
caatggtggcaaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccgctactaccttgcatttggat |
3702441 |
T |
|
| Q |
604 |
gatatggattatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgccggca |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702442 |
gatatggattatttgatcaagtgtttgaaacagccctttgaccatgttacgacggttgacatttttcctttttacgagcatgtagaattgtttgccggca |
3702541 |
T |
|
| Q |
704 |
acttcctaatatgacattcagctaacttttagaaaatttggtaaaaattg |
753 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3702542 |
acttcctaatatgacattcagctaacttttagaaaatttggtaaaaattg |
3702591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 513 - 735
Target Start/End: Original strand, 3717062 - 3717283
Alignment:
| Q |
513 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatgcctttatcccgatggaccg-ctactaccttgcatttggatgatatgga |
611 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||| || | | ||||||||||| |||||||||||||| |
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|
| T |
3717062 |
caaaattcttattgttccagcaaattgcaggaagagctggtag--gagtatgcctttatcctgatgaactggccactaccttgcagttggatgatatgga |
3717159 |
T |
|
| Q |
612 |
ttatttgatcaagtgtttgaaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgccggcaacttccta |
711 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
3717160 |
ttatttgatcgagtgtttgaaacagccctttgaccacgttacgagggttggcattttccctttttacgagcaagtagaattgtttcccggcaacttccta |
3717259 |
T |
|
| Q |
712 |
atatgacattcagctaacttttag |
735 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3717260 |
atatgacattcagctaacttttag |
3717283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 3701904 - 3702042
Alignment:
| Q |
96 |
taactgttcaaaagaaggagcatgtcctgttttcgagtcatcccttgtgcatggtggaaatggcttcgtcgcaggaatggtatgtatagaggatatgcca |
195 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3701904 |
taactgttcaaaagaagaagcatgtcctgttttcgagtcatcccttgtgcatggtggaaatggcttcgtcgcagcaatggtatgtatagaggatatgcca |
3702003 |
T |
|
| Q |
196 |
ggactagagtgctccttggttttaaggttcatgagctac |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3702004 |
ggactagagtgctccttggttttaaggttcatgagctac |
3702042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 536 - 743
Target Start/End: Original strand, 3705689 - 3705905
Alignment:
| Q |
536 |
attgcaggaagagctggtagaagaggatgcctttatcccgatggacc-gctactaccttgcatttggat-------gatatggattatttgatcaagtgt |
627 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
3705689 |
attgcaggaagatctgatagaagaggatgcctttatcctgatggacttgctactaccttgcatttggattttggatgatatggattatttgatcgtgtgt |
3705788 |
T |
|
| Q |
628 |
ttgaaacaa-ccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgccggcaacttcctaatatgacattcagct |
726 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |
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|
| T |
3705789 |
ttggaacaagccctttgaccacgttacgagggttggcatttttcttttttacgagcaagtagaattctttgccggcaacttcctaatatgacatttagcc |
3705888 |
T |
|
| Q |
727 |
aacttttagaaaatttg |
743 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3705889 |
aacttttagaaaatttg |
3705905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 180 - 430
Target Start/End: Original strand, 3713443 - 3713693
Alignment:
| Q |
180 |
tatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacat |
279 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||||||| |||| | |||||||||||||||| || |||||||||||||||||||||||| |||||| || |
|
|
| T |
3713443 |
tatagtgggtatgcctgtactagagtactcattggtttaaaggatgatgagctacatttatgcggtgatcctagtgttttgcatattgtttgaaagatat |
3713542 |
T |
|
| Q |
280 |
atcaagatacaaaagatgagttgtgtgag---taacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaaga |
376 |
Q |
| |
|
|| |||||||| ||||||||||||| ||| ||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| | |||| |||| |
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|
| T |
3713543 |
ataaagatacagaagatgagttgtgcgagcaaaaactatatgagagattcaaacagttggtggttgaagcaaagaccctgcttggaaatgtatgttaaga |
3713642 |
T |
|
| Q |
377 |
tttacgagatgagttgtgtgagtaaacattgtgagaactttgccaccagaaatt |
430 |
Q |
| |
|
| | ||||||||||||||||| |||||| ||||| |||||||||||||||| |
|
|
| T |
3713643 |
tacaggagatgagttgtgtgag-caacattatgaga--tttgccaccagaaatt |
3713693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 457 - 720
Target Start/End: Original strand, 3708327 - 3708599
Alignment:
| Q |
457 |
ctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattct-----tactgtt----ccagcaaattgcaggaaga |
547 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||| | | || | ||||| ||||| |
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|
| T |
3708327 |
ctgaatctcaacatttgaagggtgattttcaatagcctttcgaagtacaatggtgacaaaattcttcgtgtactggtgtcacaagttatttgcaagaaga |
3708426 |
T |
|
| Q |
548 |
gctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttgaaacaaccctttgacc |
646 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||| | | || ||||||||||| |||||| || ||| ||||| |||||||||||| | ||||||| | |
|
|
| T |
3708427 |
gccggttgaagaggatgcctttatctcgatggactcaccacaaccttgcatttagatgatttgatttacttgatagagtgtttgaaacca-cctttgatc |
3708525 |
T |
|
| Q |
647 |
atgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgcc-ggcaacttcctaatatgacat |
720 |
Q |
| |
|
||| ||| | ||||| | |||||||||||| ||||| || |||||||| || | |||||||||||||| |||| |
|
|
| T |
3708526 |
atgctactaaggttggc-cttttcctttttatgagcaggtcaaattgtttcccagacaacttcctaatattacat |
3708599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 3719951 - 3720018
Alignment:
| Q |
228 |
gagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagacatatcaagatacaaaaga |
295 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
3719951 |
gagctacatttatgcggtgatcctaatgttttgcatattgttcaaaagacatatcaagatacagaaga |
3720018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 564
Target Start/End: Original strand, 3713740 - 3713791
Alignment:
| Q |
513 |
caaaattcttactgttccagcaaattgcaggaagagctggtagaagaggatg |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
3713740 |
caaaattcttactgttccagcaaattgcaggaagtgctggtggaagaggatg |
3713791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 315 - 428
Target Start/End: Original strand, 3716900 - 3717013
Alignment:
| Q |
315 |
tatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaaggcatgtcaagatttacgagatgagttgtgtgag----taaacattgtga |
410 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| | || |||||||||||||| | |||||| ||| |
|
|
| T |
3716900 |
tatgagaggttcaaacagttggtggttgaatccaagaccctgc----aaaggtatgtcaagatacaagaaatgagttgtgtgagcaaattaacattatga |
3716995 |
T |
|
| Q |
411 |
gaactttgccaccagaaa |
428 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
3716996 |
gagctttgccaccagaaa |
3717013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 3713301 - 3713350
Alignment:
| Q |
81 |
tttattgaagtctgttaactgttcaaaagaaggagcatgtcctgttttcg |
130 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
3713301 |
tttattgaagtccgttaactggtcaaaagaagaagcatgtcctgttttcg |
3713350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3701843 - 3701900
Alignment:
| Q |
1 |
ttgcaaatttcaagtagtgtannnnnnngttgtatattattgttaattctgttgaatt |
58 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3701843 |
ttgcaaatttcaagtcgtgtatttttttgttgtatattattgttaattctgttgaatt |
3701900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 446 - 739
Target Start/End: Complemental strand, 3520411 - 3520102
Alignment:
| Q |
446 |
tggggacgggcctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtagcaaaattcttactgttccagc------------ |
533 |
Q |
| |
|
|||||| |||||| ||||| ||||||| |||||||||||| | || |||||| |||||||| ||| |||||||||| |||||||||| |
|
|
| T |
3520411 |
tggggatgggccttaaccttaacattcgaagggtgatttttaataacctttcaaagtacaacggtgacaaaattcttcctgttccagcgtcacaggttaa |
3520312 |
T |
|
| Q |
534 |
--aaattgcaggaagagctggtagaagaggatgcctttatcccgatggac-cgctactaccttgcatttggatgatatggattatttgatcaagtgtttg |
630 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||| ||| ||||| |||||||| || ||| ||||||| |||||| |||||||| |
|
|
| T |
3520311 |
gcaaattgccggaagagctggtcgaagaggatgtgtttatcccgatggactcgccactactttgcatttagaggatttggattacttgatcgagtgtttg |
3520212 |
T |
|
| Q |
631 |
aaacaaccctttgaccatgttacgagggttgacatttttcctttttacgagcatgtagaattgtttgccgg-caacttcctaatatgacattcagctaac |
729 |
Q |
| |
|
|||||||||||||| ||||| || ||||| | ||||||||| ||| ||||| || |||||||| ||||| |||||| |||| |||||||||||| | | |
|
|
| T |
3520211 |
aaacaaccctttgatcatgtggagaaggttggcctttttccttattatgagcaggttgaattgttcgccggacaactttctaacatgacattcagccagc |
3520112 |
T |
|
| Q |
730 |
ttttagaaaa |
739 |
Q |
| |
|
|||||||||| |
|
|
| T |
3520111 |
ttttagaaaa |
3520102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 179 - 364
Target Start/End: Complemental strand, 3520800 - 3520615
Alignment:
| Q |
179 |
gtatagaggatatgccaggactagagtgctccttggttttaaggttcatgagctacatttatgtggcgatcctagtgttttgcatattgttcgaaagaca |
278 |
Q |
| |
|
||||||||| ||||| ||||||| | |||||||||||| | || | | ||| |||||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
3520800 |
gtatagaggttatgcatggactagggcgctccttggtttgatggctgacgagatacatttatgcggtgatcctagtgttttggatattgttcgaaagatc |
3520701 |
T |
|
| Q |
279 |
tatcaagatacaaaagatgagttgtgtgagtaacaatatgagaggttcaaacagttggtggtagaagccaagaccctgcttggaaa |
364 |
Q |
| |
|
| ||| || ||| |||||| |||| |||| |||| |||||||||||||||| |||||| || ||||| ||||||||||||||||| |
|
|
| T |
3520700 |
tgtcaggaaacaggagatgatttgtatgagcaacattatgagaggttcaaaccgttggtagtcgaagcaaagaccctgcttggaaa |
3520615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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