View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_10 (Length: 403)
Name: NF15768_low_10
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 32504296 - 32504667
Alignment:
| Q |
12 |
aagaagctatcaaaataaaaagtatttgaaagctcgaatggttaaaatataagctcgcttctgactttatattggacatttactgtatttttctctggat |
111 |
Q |
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| T |
32504296 |
aagaagctatcaaaataaaaagtatttgaaagcacgaatggttaaaatataggctcgcttctgactttatattggatatttactgtatttttctctggat |
32504395 |
T |
|
| Q |
112 |
gtgccgatgtgggacttaaaaactagtaccatattacaatgaagttttaccataaaaaatggtcttgcattgtgttaacattacaagatcaagttagtgt |
211 |
Q |
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| T |
32504396 |
gtgccgatgtgggacttaaaaactactaccatattacaatgaagttttaccataaaaaatggtcttgcattgtgttaacattacaagatcaagttggtgt |
32504495 |
T |
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| Q |
212 |
gtgtttttgggatccatgttgaggaatgtgcattgtgttaaccccgtcagattgttacttctcgagtccactgtttctttcatttagtctgattcacatt |
311 |
Q |
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| T |
32504496 |
gtgtttttgggatccatgttgaggaatgtgcattgtgttaa-cccgtcagattgttacttctcgagtccactgtttctttcatttagtctgattcacatt |
32504594 |
T |
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| Q |
312 |
ttagtttatctccataaaaaattgatgaataaacattttttagtcgacatttcttttttatatttccctagct |
384 |
Q |
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| T |
32504595 |
ttagtttatctccataaaaaattgatgaataaacattttttagtcgacatttcttttttatatttcccaagct |
32504667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 32500458 - 32500547
Alignment:
| Q |
74 |
gactttatattggacatttactgtatttttctctggatgtgccgatgtgggacttaaaaactagtaccatattacaatgaagttttacca |
163 |
Q |
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|||||||||||| |||||| |||||||||||||| || | | |||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
32500458 |
gactttatattgaacatttgctgtatttttctctcaatatacggatgtgggacttaaaaactactatcatattacaatgaagttttacca |
32500547 |
T |
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