View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_12 (Length: 397)
Name: NF15768_low_12
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 44 - 397
Target Start/End: Original strand, 52379310 - 52379659
Alignment:
| Q |
44 |
atctgataagtaatattaaattttcttggtttaatttaaaatgtaataaaactgataagaaaagaagaactaaattcatcatatatgttgtagcaactac |
143 |
Q |
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| T |
52379310 |
atctgataagtaatattaaattttcttggtttaatttaaaatgtaataaaactgataagaaaagaagaactaaattcat---atatgttgtagcaactac |
52379406 |
T |
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| Q |
144 |
aaaatattagcacttgtcatgaaaacttaaccaacattatgcactgcatggattttttaagatgatggctttagaatgaaattgattgcataattacctt |
243 |
Q |
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| T |
52379407 |
aaaatattagcacttgtcatgaaaacttaaccaacattatgtactgcatggatttt-taagatgatagctttacaatgaaattgattgcataattacctt |
52379505 |
T |
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| Q |
244 |
tgctcattgccaaattgccttccattggtgatattgataccagcacctcccctgtatgttggcagtgggatttgatcatgctcaattcgtatgagatctt |
343 |
Q |
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| T |
52379506 |
tgctcattgccaaattgccttccattggtgatattgataccagcacctcccctgtatgttggcagtgggatttgatcatgctcaattcgtatgagatctt |
52379605 |
T |
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| Q |
344 |
ccttgaggatctcgtaatgcattttcacctcttgtatggattttccaccaacag |
397 |
Q |
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| T |
52379606 |
ccttgaggatctcgtaatgcattttcacctcttgtatggattttccaccaacag |
52379659 |
T |
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