View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15768_low_13 (Length: 357)

Name: NF15768_low_13
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15768_low_13
NF15768_low_13
[»] chr2 (2 HSPs)
chr2 (67-216)||(923592-923737)
chr2 (236-345)||(14455449-14455558)
[»] scaffold0003 (2 HSPs)
scaffold0003 (236-345)||(34641-34750)
scaffold0003 (236-342)||(41308-41417)
[»] chr3 (1 HSPs)
chr3 (67-282)||(46833160-46833357)
[»] chr6 (1 HSPs)
chr6 (236-342)||(27445941-27446050)
[»] chr8 (1 HSPs)
chr8 (67-224)||(27540883-27541035)
[»] chr7 (1 HSPs)
chr7 (64-123)||(45032127-45032186)
[»] chr5 (1 HSPs)
chr5 (62-123)||(4357204-4357264)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 923737 - 923592
Alignment:
Q  67 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 166  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||       |||||||||||||||  || |||| |||||||    
T  923737 tgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaaatctaaaaagacaccatttttcaatccaaactctt-aaagaag 923639  T
Q  167 aaaaacatatgattagagacacactttaaattaatagttattgaaacata 216  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||    
T  923638 aaaaacatatgattagagacacactttaa---aatagtgattgaaacata 923592  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 14455449 - 14455558
Alignment:
Q  236 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga 335  Q
    ||||||||| ||||   ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  14455449 tatgaccacatatagatttcatttataaactttgacagaaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata 14455548  T
Q  336 attatatatt 345  Q
    ||| ||||||    
T  14455549 attttatatt 14455558  T

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Target: scaffold0003 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 34641 - 34750
Alignment:
Q  236 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga 335  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  34641 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata 34740  T
Q  336 attatatatt 345  Q
    ||||||||||    
T  34741 attatatatt 34750  T

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Target: scaffold0003; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 342
Target Start/End: Original strand, 41308 - 41417
Alignment:
Q  236 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc 332  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  41308 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc 41407  T
Q  333 agaattatat 342  Q
    | ||||||||    
T  41408 ataattatat 41417  T

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Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 67 - 282
Target Start/End: Original strand, 46833160 - 46833357
Alignment:
Q  67 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 166  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||| |||  |           ||||||||| |||||| || ||||||| ||||    
T  46833160 tgcattcatttttaaactctaaaaagacaccatttttttatctaaactctaaaaaga-----------caccatttt-caatcgaaactcttaaa-gaag 46833246  T
Q  167 aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattgatacattagttttatgaccacttataagcttcatttataaact 266  Q
    ||||||| ||||||||||||||  |||||| ||||    ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46833247 aaaaacacatgattagagacac--tttaaaataatg---attgaaacatagttattgatacattagttttatgaccacatataggcttcatttataaact 46833341  T

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Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 27446050 - 27445941
Alignment:
Q  236 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc 332  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  27446050 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc 27445951  T
Q  333 agaattatat 342  Q
    | ||||||||    
T  27445950 ataattatat 27445941  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 27540883 - 27541035
Alignment:
Q  67 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 166  Q
    ||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||| | |       ||| |||||||||||  || |||| |||||||    
T  27540883 tgcattcatttataagctataa-aagacaccatttttctatctaaactcttaaagaactataaaacgacactatttttcaatcaaaattctt-aaagaag 27540980  T
Q  167 aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattga 224  Q
    ||||||| ||||||| ||||| |||||||||   |||| |||||||||||||||||||    
T  27540981 aaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattga 27541035  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 45032186 - 45032127
Alignment:
Q  64 agttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa 123  Q
    |||||||| ||||| |||||||| | ||||||| ||||| ||||||| ||||||||||||    
T  45032186 agttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa 45032127  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 4357264 - 4357204
Alignment:
Q  62 tcagttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa 123  Q
    |||| |||||||||||| ||||||| | |||||||  ||||| |||||||||||||||||||    
T  4357264 tcagctgcattcatttccaaactctta-aagacacattttttatatctaaactcttaaagaa 4357204  T

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