View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15768_low_15 (Length: 327)
Name: NF15768_low_15
Description: NF15768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15768_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 4774752 - 4774870
Alignment:
| Q |
16 |
ctggagaaacatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacggaacaata |
115 |
Q |
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| T |
4774752 |
ctggagaaacatttcgcaggagataatctcttccccttacttaaatgcatcaatgtctttcttttaagaatcgatatcaatttttgtttacggaacaata |
4774851 |
T |
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| Q |
116 |
aaataaaccgtttccttca |
134 |
Q |
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| T |
4774852 |
aaataaaccgtttccttca |
4774870 |
T |
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Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 206 - 327
Target Start/End: Original strand, 4774941 - 4775062
Alignment:
| Q |
206 |
tttggggttaataccttaaataaacactaatttagcaatgactgattttcttaaaaggctnnnnnnntgatatattaacaaatcaggatcaactgtctca |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |
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| T |
4774941 |
tttggggttaatatcttaaataaacactaatttagcaatgactgattttcttaaaaggctaaaaaaatggtatattaacaaatcaggatcaactgtttca |
4775040 |
T |
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| Q |
306 |
gcataggtgtacgaaaccaacc |
327 |
Q |
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| T |
4775041 |
gcataggtgtacgaaaccaacc |
4775062 |
T |
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